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Locus name | AT3G51880 |
Alias | HMGB1 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Others | Effect for Senescence | unclear | Gene Description | HIGH MOBILITY GROUP B 1 (HMGB1); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: nuclear chromatin, chromatin, cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 22896 Blast hits to 12639 proteins in 616 species: Archae - 20; Bacteria - 558; Metazoa - 11398; Fungi - 2358; Plants - 1129; Viruses - 394; Other Eukaryotes - 7039 (source: NCBI BLink). | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Sequence | AT3G51880.1 | Genomic | mRNA | CDS | Protein AT3G51880.2 | Genomic | mRNA | CDS | Protein AT3G51880.3 | Genomic | mRNA | CDS | Protein AT3G51880.4 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
| Details | | target: AT3G51880.1 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -32.0 kcal/mol p-value: 0.000258
position: 654 target 5' A C C G 3' UGACGAUGAUGAUGA GA GA ACUGCUACUACUACU CU CU miRNA 3' U A 5'
target: AT3G51880.2 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -32.0 kcal/mol p-value: 0.000266
position: 675 target 5' A C C G 3' UGACGAUGAUGAUGA GA GA ACUGCUACUACUACU CU CU miRNA 3' U A 5'
target: AT3G51880.3 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -32.0 kcal/mol p-value: 0.000230
position: 582 target 5' A C C G 3' UGACGAUGAUGAUGA GA GA ACUGCUACUACUACU CU CU miRNA 3' U A 5'
target: AT3G51880.4 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -32.0 kcal/mol p-value: 0.000213
position: 531 target 5' A C C G 3' UGACGAUGAUGAUGA GA GA ACUGCUACUACUACU CU CU miRNA 3' U A 5'
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Ortholog Group | |
| Ortholog Groups: OG5_126740 | |
Cross Link | |
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| Localization | nucleus | Evidence | SUBAcon | Pubmed ID | 23180787 |
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