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About
Basic information
Locus name
AT5G02490
Alias
HSC70-2
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Others
Effect for Senescence
unclear
Gene Description
heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, response to bacterium; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (TAIR:AT5G02500.1); Has 24929 Blast hits to 24652 proteins in 3112 species: Archae - 103; Bacteria - 9641; Metazoa - 3128; Fungi - 1215; Plants - 726; Viruses - 241; Other Eukaryotes - 9875 (source: NCBI BLink).
Evidence
Genomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94
Sequence
AT5G02490.1 |
Genomic
|
mRNA
|
CDS
|
Protein
Ortholog Group
Ortholog Groups:
OG5_126588
Accession
Taxon
NP_001119156
Arabidopsis thaliana
NP_172382
Arabidopsis thaliana
NP_173055
Arabidopsis thaliana
NP_176036
Arabidopsis thaliana
NP_187555
Arabidopsis thaliana
NP_187864
Arabidopsis thaliana
NP_195869
( AT5G02490 )
Arabidopsis thaliana
NP_195870
Arabidopsis thaliana
NP_198206
Arabidopsis thaliana
NP_199017
Arabidopsis thaliana
NP_851119
Arabidopsis thaliana
CMP145C
Cyanidioschyzon merolae strain 10D
CMT579C
Cyanidioschyzon merolae strain 10D
133650
Chlamydomonas reinhardtii
133859
Chlamydomonas reinhardtii
185673
Chlamydomonas reinhardtii
NP_113319
Guillardia theta
ACO63925
Micromonas sp. RCC299
ACO68376
Micromonas sp. RCC299
NP_001044757
Oryza sativa Japonica Group
NP_001045675
Oryza sativa Japonica Group
NP_001049712
Oryza sativa Japonica Group
NP_001049715
Oryza sativa Japonica Group
NP_001049719
Oryza sativa Japonica Group
NP_001051048
Oryza sativa Japonica Group
NP_001051724
Oryza sativa Japonica Group
NP_001055339
Oryza sativa Japonica Group
NP_001055613
Oryza sativa Japonica Group
NP_001055754
Oryza sativa Japonica Group
NP_001061194
Oryza sativa Japonica Group
NP_001067408
Oryza sativa Japonica Group
NP_001068540
Oryza sativa Japonica Group
e_gw1.02.00.90.1
Ostreococcus tauri
e_gw1.17.00.27.1
Ostreococcus tauri
estExt_Genewise1.C_1810001
Physcomitrella patens subsp. patens
estExt_Genewise1.C_3510021
Physcomitrella patens subsp. patens
estExt_Genewise1.C_390053
Physcomitrella patens subsp. patens
estExt_Genewise1.C_5260001
Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_20112
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_288000014
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_298000015
Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_91000017
Physcomitrella patens subsp. patens
fgenesh2_pg.scaffold_97000105
Physcomitrella patens subsp. patens
29585.m000574
Ricinus communis
29887.m000234
Ricinus communis
30025.m000589
Ricinus communis
30068.m002531
Ricinus communis
30073.m002215
Ricinus communis
30131.m006880
Ricinus communis
30131.m006881
Ricinus communis
e_gw1.22.27.1
Thalassiosira pseudonana CCMP1335
estExt_Genewise1.C_chr_30700
Thalassiosira pseudonana CCMP1335
estExt_thaps1_ua_kg.C_chr_60235
Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_8000098
Thalassiosira pseudonana CCMP1335
XP_002946253
Volvox carteri f. nagariensis
XP_002947129
Volvox carteri f. nagariensis
XP_002949576
Volvox carteri f. nagariensis
XP_002949720
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR19375
0.0
4
653
No hit
NA
PRINTS
PR00301
1.1E-87
8
21
IPR013126
Heat shock protein 70 family
SUPERFAMILY
SSF53067
3.4E-68
8
191
No hit
NA
Pfam
PF00012
4.4E-272
9
618
IPR013126
Heat shock protein 70 family
ProSitePatterns
PS00297
NA
12
19
IPR018181
Heat shock protein 70, conserved site
PRINTS
PR00301
1.1E-87
36
48
IPR013126
Heat shock protein 70 family
PRINTS
PR00301
1.1E-87
58
66
IPR013126
Heat shock protein 70 family
PRINTS
PR00301
1.1E-87
146
166
IPR013126
Heat shock protein 70 family
SUPERFAMILY
SSF53067
6.8E-68
198
388
No hit
NA
ProSitePatterns
PS00329
NA
203
216
IPR018181
Heat shock protein 70, conserved site
PRINTS
PR00301
1.1E-87
209
219
IPR013126
Heat shock protein 70 family
PRINTS
PR00301
1.1E-87
337
353
IPR013126
Heat shock protein 70 family
ProSitePatterns
PS01036
NA
340
354
IPR018181
Heat shock protein 70, conserved site
PRINTS
PR00301
1.1E-87
369
389
IPR013126
Heat shock protein 70 family
SUPERFAMILY
SSF100920
2.1E-64
392
549
No hit
NA
PRINTS
PR00301
1.1E-87
396
415
IPR013126
Heat shock protein 70 family
PRINTS
PR00301
1.1E-87
477
493
IPR013126
Heat shock protein 70 family
Coils
Coil
NA
521
542
No hit
NA
SUPERFAMILY
SSF100934
6.4E-30
543
624
No hit
NA
Subcellular Localization
Localization
cytosol
Evidence
SUBAcon
Pubmed ID
23180787