Basic information
Locus name	AT5G26040
Alias	HDA2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	HDA2; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA18; H3/H4 histone acetyltransferase/ histone deacetylase (TAIR:AT5G61070.1); Has 4061 Blast hits to 4042 proteins in 664 species: Archae - 82; Bacteria - 1112; Metazoa - 620; Fungi - 183; Plants - 179; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT5G26040.1 | Genomic | mRNA | CDS | Protein AT5G26040.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129938	Accession Taxon NP_568480 ( AT5G26040 ) Arabidopsis thaliana NP_851078 Arabidopsis thaliana CMQ158C Cyanidioschyzon merolae strain 10D 117491 Chlamydomonas reinhardtii 119655 Chlamydomonas reinhardtii ACO65354 Micromonas sp. RCC299 ACO65937 Micromonas sp. RCC299 NP_001057914 Oryza sativa Japonica Group e_gw1.16.00.172.1 Ostreococcus tauri e_gw1.16.00.178.1 Ostreococcus tauri e_gw1.53.63.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1270064 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_34000240 Physcomitrella patens subsp. patens 29794.m003331 Ricinus communis e_gw1.22.99.1 Thalassiosira pseudonana CCMP1335 e_gw1.8.166.1 Thalassiosira pseudonana CCMP1335 XP_002950145 Volvox carteri f. nagariensis XP_002951393 Volvox carteri f. nagariensis XP_002952452 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10625 2.3E-176 54 383 IPR000286 Histone deacetylase superfamily SUPERFAMILY SSF52768 9.1E-70 73 370 No hit NA Pfam PF00850 1.7E-59 91 373 IPR023801 Histone deacetylase domain PRINTS PR01270 1.5E-11 197 220 IPR000286 Histone deacetylase superfamily PRINTS PR01270 1.5E-11 231 246 IPR000286 Histone deacetylase superfamily PRINTS PR01270 1.5E-11 308 318 IPR000286 Histone deacetylase superfamily
Subcellular Localization
Localization 1 Localization nucleus Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization plasma membrane,endoplasmic reticulum Evidence SUBAcon Pubmed ID 23180787