Basic information
Locus name	AT3G26380
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (TAIR:AT3G56310.1); Has 738 Blast hits to 734 proteins in 180 species: Archae - 0; Bacteria - 177; Metazoa - 230; Fungi - 167; Plants - 103; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Pathway	KEGG map00052 (EC 3.2.1.22) map00561 (EC 3.2.1.22) map00600 (EC 3.2.1.22) map00603 (EC 3.2.1.22)
Sequence	AT3G26380.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G26380.1  miRNA: ath-miR5996 miRNA: ath-miR5996 mfe: -32.9 kcal/mol  p-value: 0.000144  position: 627  target 5' G       G             C  3'             AGGGCUU UGUUUGGAUGUCG                 UUUCGAA AUAGACCUACAGU      miRNA  3' G       G                5'
Ortholog Group
Ortholog Groups: OG5_170541	Accession Taxon NP_189269 ( AT3G26380 ) Arabidopsis thaliana NP_001043203 Oryza sativa Japonica Group estExt_Genewise1.C_800029 Physcomitrella patens subsp. patens 29792.m000615 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11452 1.5E-93 1 389 No hit NA PRINTS PR00740 3.3E-8 36 55 IPR002241 Glycoside hydrolase, family 27 SUPERFAMILY SSF51445 6.0E-54 38 149 IPR017853 Glycoside hydrolase, superfamily PRINTS PR00740 3.3E-8 130 151 IPR002241 Glycoside hydrolase, family 27 SUPERFAMILY SSF51445 6.0E-54 197 387 IPR017853 Glycoside hydrolase, superfamily PRINTS PR00740 3.3E-8 345 366 IPR002241 Glycoside hydrolase, family 27 SUPERFAMILY SSF51011 2.0E-11 558 643 No hit NA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787