Basic information
Locus name	AT3G62710
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 3 protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20950.2); Has 6428 Blast hits to 6087 proteins in 963 species: Archae - 22; Bacteria - 3408; Metazoa - 6; Fungi - 874; Plants - 276; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT3G62710.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129218	Accession Taxon NP_001078254 Arabidopsis thaliana NP_190284 Arabidopsis thaliana NP_190285 Arabidopsis thaliana NP_190288 Arabidopsis thaliana NP_190289 Arabidopsis thaliana NP_191830 ( AT3G62710 ) Arabidopsis thaliana NP_197594 Arabidopsis thaliana NP_197595 Arabidopsis thaliana NP_680141 Arabidopsis thaliana NP_851048 Arabidopsis thaliana NP_001042806 Oryza sativa Japonica Group NP_001044387 Oryza sativa Japonica Group NP_001045791 Oryza sativa Japonica Group NP_001051274 Oryza sativa Japonica Group NP_001051275 Oryza sativa Japonica Group NP_001051277 Oryza sativa Japonica Group estExt_Genewise1.C_18210001 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_490117 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2170006 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_309000009 Physcomitrella patens subsp. patens 27672.m000064 Ricinus communis 29681.m001297 Ricinus communis 29852.m002020 Ricinus communis 29976.m000487 Ricinus communis 29976.m000489 Ricinus communis 30072.m000981 Ricinus communis 35072.m000015 Ricinus communis 35902.m000018 Ricinus communis 43378.m000013 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR30620 1.2E-232 1 647 IPR026892 Glycoside hydrolase family 3 SUPERFAMILY SSF51445 3.4E-113 36 423 IPR017853 Glycoside hydrolase, superfamily Pfam PF00933 1.0E-88 57 386 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 7.9E-26 125 141 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 7.9E-26 149 168 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 7.9E-26 195 211 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 7.9E-26 235 251 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 7.9E-26 305 323 IPR001764 Glycoside hydrolase, family 3, N-terminal Pfam PF01915 8.9E-39 424 648 IPR002772 Glycoside hydrolase family 3 C-terminal domain SUPERFAMILY SSF52279 2.9E-50 424 648 IPR002772 Glycoside hydrolase family 3 C-terminal domain