Basic information
Locus name	AT4G29360
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G56590.1); Has 1761 Blast hits to 1726 proteins in 122 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 15; Plants - 1731; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Pathway	KEGG map00500 (EC 3.2.1.39)
Sequence	AT4G29360.1 | Genomic | mRNA | CDS | Protein AT4G29360.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G29360.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -30.8 kcal/mol  p-value: 0.002637  position: 1363  target 5' C                     G  3'             CAUC GGAGGAGGAGGAG GA                 GUAG UCUUCUUCUCCUC CU      miRNA  3'      U             A     5'  target: AT4G29360.2  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -30.8 kcal/mol  p-value: 0.002826  position: 1363  target 5' C                     G  3'             CAUC GGAGGAGGAGGAG GA                 GUAG UCUUCUUCUCCUC CU      miRNA  3'      U             A     5'
Ortholog Group
Ortholog Groups: OG5_160334	Accession Taxon NP_200470 Arabidopsis thaliana NP_567828 Arabidopsis thaliana NP_849556 ( AT4G29360 ) Arabidopsis thaliana NP_001044198 Oryza sativa Japonica Group e_gw1.85.46.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1380053 Physcomitrella patens subsp. patens 29912.m005363 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32227 0.0 1 469 No hit NA Pfam PF00332 4.6E-101 27 345 IPR000490 Glycoside hydrolase, family 17 SUPERFAMILY SSF51445 2.0E-87 27 343 IPR017853 Glycoside hydrolase, superfamily ProSitePatterns PS00587 NA 258 271 IPR000490 Glycoside hydrolase, family 17 Pfam PF07983 2.0E-16 390 461 IPR012946 X8 SMART SM00768 1.9E-38 390 471 IPR012946 X8
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787