Leaf Senescence DataBase

Basic information

Locus name

AT5G57655

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others:Cell wall

Effect for Senescence

Unclear

Gene Description

Xylose isomerase. Upregulated in senescent leaves.

Evidence

Molecular evidence: SSH and Northern [Ref 1]

References

1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M
Large-scale identification of leaf senescence-associated genes.
Plant J. 2003 Dec;36(5):629-42

Gene Ontology

biological process	carbohydrate metabolic process
molecular function	xylose isomerase activity

Pathway

KEGG

Sequence

Ortholog Group

Ortholog Groups: OG5_137548

Accession	Taxon
NP_568861 ( AT5G57655 )	Arabidopsis thaliana
ACO67878	Micromonas sp. RCC299
NP_001060585	Oryza sativa Japonica Group
estExt_gwp_gw1.C_1800050	Physcomitrella patens subsp. patens
27766.m000154	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR32176	0.0	36	475	No hit	NA
SUPERFAMILY	SSF51658	4.0E-162	44	473	IPR013022	Xylose isomerase-like, TIM barrel domain
TIGRFAM	TIGR02630	3.4E-212	45	475	IPR013452	Xylose isomerase, bacterial-type
Hamap	MF_00455	49.3	52	477	IPR001998	Xylose isomerase
ProSiteProfiles	PS51415	175.4	76	477	IPR001998	Xylose isomerase
Pfam	PF01261	5.2E-22	128	352	IPR013022	Xylose isomerase-like, TIM barrel domain
PRINTS	PR00688	2.0E-84	133	155	IPR001998	Xylose isomerase
Coils	Coil	NA	153	174	No hit	NA
PRINTS	PR00688	2.0E-84	174	194	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	197	216	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	221	242	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	248	267	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	270	294	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	312	339	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	341	352	IPR001998	Xylose isomerase
PRINTS	PR00688	2.0E-84	374	385	IPR001998	Xylose isomerase

Subcellular Localization