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About
Basic information   
Locus name AT3G15720
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryLipid/Carbohydrate metabolism
Effect for Senescenceunclear
Gene Descriptionglycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G27530.1); Has 2742 Blast hits to 2728 proteins in 381 species: Archae - 2; Bacteria - 582; Metazoa - 8; Fungi - 1167; Plants - 897; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
biological process
molecular function
SequenceAT3G15720.1 | Genomic | mRNA | CDS | Protein
AT3G15720.2 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_130068
AccessionTaxon
NP_001078162Arabidopsis thaliana
NP_175244Arabidopsis thaliana
NP_191310Arabidopsis thaliana
NP_192098Arabidopsis thaliana
NP_194963Arabidopsis thaliana
NP_194964Arabidopsis thaliana
NP_195292Arabidopsis thaliana
NP_197222Arabidopsis thaliana
NP_198105Arabidopsis thaliana
NP_199296Arabidopsis thaliana
NP_199297Arabidopsis thaliana
NP_563654Arabidopsis thaliana
NP_565232Arabidopsis thaliana
NP_566524 ( AT3G15720 ) Arabidopsis thaliana
NP_680757Arabidopsis thaliana
NP_850359Arabidopsis thaliana
NP_001042805Oryza sativa Japonica Group
NP_001055086Oryza sativa Japonica Group
e_gw1.104.72.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_170205Physcomitrella patens subsp. patens
29761.m000417Ricinus communis
29848.m004639Ricinus communis
29889.m003362Ricinus communis
30076.m004591Ricinus communis
30128.m008960Ricinus communis
48595.m000013Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR317361.2E-2031439No hitNA
SUPERFAMILYSSF511261.6E-1207388IPR011050Pectin lyase fold/virulence factor
PfamPF002958.6E-8850370IPR000743Glycoside hydrolase, family 28
SMARTSM00710730.0165191IPR006626Parallel beta-helix repeat
SMARTSM0071028.0192213IPR006626Parallel beta-helix repeat
SMARTSM007104,900.0215235IPR006626Parallel beta-helix repeat
ProSitePatternsPS00502NA222235IPR000743Glycoside hydrolase, family 28
SMARTSM00710330.0245266IPR006626Parallel beta-helix repeat
SMARTSM007108,400.0274295IPR006626Parallel beta-helix repeat
SMARTSM007107,300.0310337IPR006626Parallel beta-helix repeat
Subcellular Localization   
Localizationextracellular
EvidenceSUBAcon
Pubmed ID23180787