Basic information
Locus name	AT5G43300
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT3G02040.1); Has 704 Blast hits to 666 proteins in 212 species: Archae - 15; Bacteria - 168; Metazoa - 221; Fungi - 114; Plants - 54; Viruses - 2; Other Eukaryotes - 130 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process glycerol metabolic process lipid metabolic process molecular function glycerophosphodiester phosphodiesterase activity phosphoric diester hydrolase activity
Sequence	AT5G43300.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128954	Accession Taxon NP_198924 Arabidopsis thaliana NP_199144 ( AT5G43300 ) Arabidopsis thaliana NP_566159 Arabidopsis thaliana NP_974865 Arabidopsis thaliana CMR112C Cyanidioschyzon merolae strain 10D 102445 Chlamydomonas reinhardtii 206119 Chlamydomonas reinhardtii ACO62504 Micromonas sp. RCC299 NP_001046948 Oryza sativa Japonica Group NP_001052651 Oryza sativa Japonica Group NP_001062357 Oryza sativa Japonica Group e_gw1.107.86.1 Physcomitrella patens subsp. patens e_gw1.288.11.1 Physcomitrella patens subsp. patens e_gw1.70.77.1 Physcomitrella patens subsp. patens gw1.227.40.1 Physcomitrella patens subsp. patens 29929.m004597 Ricinus communis 30131.m007020 Ricinus communis XP_002950421 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF51695 2.9E-38 33 124 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain PANTHER PTHR22958 2.4E-131 35 349 No hit NA Pfam PF03009 2.8E-50 40 315 IPR004129 Glycerophosphoryl diester phosphodiesterase SUPERFAMILY SSF51695 2.9E-38 152 315 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain