Leaf Senescence DataBase

Basic information

Locus name

AT2G20860

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others:Metabolism

Effect for Senescence

Unclear

Gene Description

Lipoic acid synthase. Upregulated in senescent leaves.

Evidence

Molecular evidence: SSH and Northern [Ref 1]

References

1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M
Large-scale identification of leaf senescence-associated genes.
Plant J. 2003 Dec;36(5):629-42

Gene Ontology

biological process	lipoate biosynthetic process
cellular component	mitochondrion
molecular function	4 iron, 4 sulfur cluster binding lipoate synthase activity

Pathway

KEGG

Sequence

AT2G20860.1 | Genomic | mRNA | CDS | Protein

miRNA Interaction

Details


target: AT2G20860.1 miRNA: ath-miR156h miRNA: ath-miR156h mfe: -26.2 kcal/mol p-value: 0.003916 position: 1218 target 5' U G G 3' UGCUUU UUUCUUCUG CG ACGAGA AAAGAAGAC GU miRNA 3' C G A 5'

Ortholog Group

Ortholog Groups: OG5_127348

Accession	Taxon
NP_179682 ( AT2G20860 )	Arabidopsis thaliana
NP_568196	Arabidopsis thaliana
CML179C	Cyanidioschyzon merolae strain 10D
CMQ441C	Cyanidioschyzon merolae strain 10D
194766	Chlamydomonas reinhardtii
196092	Chlamydomonas reinhardtii
ACO66119	Micromonas sp. RCC299
ACO69139	Micromonas sp. RCC299
NP_001044370	Oryza sativa Japonica Group
NP_001052964	Oryza sativa Japonica Group
NP_001056016	Oryza sativa Japonica Group
e_gw1.06.00.248.1	Ostreococcus tauri
estExt_Genewise1.C_120204	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_700191	Physcomitrella patens subsp. patens
29804.m001531	Ricinus communis
29983.m003246	Ricinus communis
e_gw1.1.337.1	Thalassiosira pseudonana CCMP1335
e_gw1.2.278.1	Thalassiosira pseudonana CCMP1335
XP_002956597	Volvox carteri f. nagariensis
XP_002958241	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF005963	8.7E-196	11	368	IPR003698	Lipoyl synthase
Hamap	MF_03128	61.0	20	370	IPR027527	Lipoyl synthase, mitochondrial
PANTHER	PTHR10949	2.5E-204	32	374	IPR003698	Lipoyl synthase
TIGRFAM	TIGR00510	1.0E-119	67	361	IPR003698	Lipoyl synthase
Hamap	MF_00206	132.1	73	366	IPR003698	Lipoyl synthase
SUPERFAMILY	SSF102114	7.7E-60	87	364	No hit	NA
SMART	SM00729	1.5E-10	124	334	IPR006638	Elongator protein 3/MiaB/NifB
Pfam	PF04055	7.4E-13	131	293	IPR007197	Radical SAM

Subcellular Localization

Localization 1
	Localization	mitochondria
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809