Basic information
Locus name	AT5G24420
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	glucosamine/galactosamine-6-phosphate isomerase-related; FUNCTIONS IN: 6-phosphogluconolactonase activity; INVOLVED IN: pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase family protein (TAIR:AT3G49360.1); Has 1726 Blast hits to 1726 proteins in 666 species: Archae - 0; Bacteria - 1008; Metazoa - 141; Fungi - 140; Plants - 83; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process pentose-phosphate shunt molecular function 6-phosphogluconolactonase activity
Pathway	KEGG map00520 (EC 3.5.99.6) MetaCyc PWY-5514 map00030 (EC 3.1.1.31)
Sequence	AT5G24420.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127501	Accession Taxon NP_172826 Arabidopsis thaliana NP_190505 Arabidopsis thaliana NP_197829 Arabidopsis thaliana NP_197830 ( AT5G24420 ) Arabidopsis thaliana NP_568445 Arabidopsis thaliana CMC120C Cyanidioschyzon merolae strain 10D 101528 Chlamydomonas reinhardtii ACO69453 Micromonas sp. RCC299 NP_001050369 Oryza sativa Japonica Group NP_001060218 Oryza sativa Japonica Group NP_001062426 Oryza sativa Japonica Group NP_001063741 Oryza sativa Japonica Group e_gw1.16.00.197.1 Ostreococcus tauri estExt_fgenesh1_pg.C_2600015 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_1000082 Physcomitrella patens subsp. patens 30174.m009090 Ricinus communis 30213.m000666 Ricinus communis 30213.m000667 Ricinus communis thaps1_ua_kg.chr_5000047 Thalassiosira pseudonana CCMP1335 XP_002954003 Volvox carteri f. nagariensis XP_002959936 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11054 8.5E-100 1 252 No hit NA SUPERFAMILY SSF100950 1.3E-60 5 252 No hit NA TIGRFAM TIGR01198 4.3E-57 8 251 IPR005900 6-phosphogluconolactonase, DevB-type Pfam PF01182 5.0E-54 15 222 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase