Home

Browse
  Species Table
  Species Tree
  Mutant
  Mutant Arabidopsis Seeds
  Mutant Rice Seeds
  Sen-ASVs
  Phenotype
  Chlorophyll Degradation
  Stay-green QTL
  Ecotype
  Public Transcriptomic
  Sen-smallRNA
  SAGs in Poplar
  SAGs in Kalanchoe serrata
  Sen-TF ChIP/DAP-Seq
  SAP in Arabidopsis
  SAP in Soybean
  Targets of Sen-AtlncRNAs
  SLAGs and Mutants
  Seed-Storage Times

Search
  Text Search
  BLAST Search

Help
  User Guide
  FAQs
  How to Cite

Download

Links
About
Basic information   
Locus name AT5G16050
AliasGRF5
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionGENERAL REGULATORY FACTOR 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF7 (GENERAL REGULATORY FACTOR 7); protein binding / protein phosphorylated amino acid binding (TAIR:AT3G02520.1); Has 2086 Blast hits to 2078 proteins in 292 species: Archae - 0; Bacteria - 2; Metazoa - 1026; Fungi - 209; Plants - 541; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT5G16050.1 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_126706
AccessionTaxon
NP_001031868Arabidopsis thaliana
NP_001031982Arabidopsis thaliana
NP_001077649Arabidopsis thaliana
NP_001154216Arabidopsis thaliana
NP_564167Arabidopsis thaliana
NP_564249Arabidopsis thaliana
NP_564451Arabidopsis thaliana
NP_564453Arabidopsis thaliana
NP_565176Arabidopsis thaliana
NP_566174Arabidopsis thaliana
NP_567344Arabidopsis thaliana
NP_568229Arabidopsis thaliana
NP_568325 ( AT5G16050 ) Arabidopsis thaliana
NP_568557Arabidopsis thaliana
NP_569012Arabidopsis thaliana
NP_849698Arabidopsis thaliana
NP_851274Arabidopsis thaliana
NP_973884Arabidopsis thaliana
CMP239CCyanidioschyzon merolae strain 10D
185967Chlamydomonas reinhardtii
187228Chlamydomonas reinhardtii
ACO61927Micromonas sp. RCC299
ACO63066Micromonas sp. RCC299
NP_001047234Oryza sativa Japonica Group
NP_001051051Oryza sativa Japonica Group
NP_001053003Oryza sativa Japonica Group
NP_001061856Oryza sativa Japonica Group
NP_001068067Oryza sativa Japonica Group
gw1.18.00.170.1Ostreococcus tauri
estExt_Genewise1.C_1400036Physcomitrella patens subsp. patens
estExt_Genewise1.C_2010026Physcomitrella patens subsp. patens
estExt_Genewise1.C_670097Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_3480002Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_1370075Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_730052Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1370068Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_73000051Physcomitrella patens subsp. patens
gw1.46.9.1Physcomitrella patens subsp. patens
28842.m000907Ricinus communis
29908.m006038Ricinus communis
29908.m006068Ricinus communis
29908.m006234Ricinus communis
30174.m009120Ricinus communis
estExt_fgenesh1_pm.C_chr_30002Thalassiosira pseudonana CCMP1335
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR188601.1E-1865255IPR00030814-3-3 protein
PIRSFPIRSF0008689.4E-1775249IPR00030814-3-3 protein
SUPERFAMILYSSF484454.3E-1036239IPR02341014-3-3 domain
PfamPF002441.7E-1127243IPR02341014-3-3 domain
SMARTSM001016.6E-2097250IPR02341014-3-3 domain
CoilsCoilNA1341No hitNA
PRINTSPR003052.0E-884170IPR00030814-3-3 protein
ProSitePatternsPS00796NA4757IPR02340914-3-3 protein, conserved site
PRINTSPR003052.0E-8890114IPR00030814-3-3 protein
PRINTSPR003052.0E-88121143IPR00030814-3-3 protein
PRINTSPR003052.0E-88156182IPR00030814-3-3 protein
PRINTSPR003052.0E-88183209IPR00030814-3-3 protein
PRINTSPR003052.0E-88210239IPR00030814-3-3 protein
ProSitePatternsPS00797NA219238IPR02340914-3-3 protein, conserved site
Subcellular Localization   
Localizationcytosol
EvidenceSUBAcon
Pubmed ID23180787