Basic information
Locus name	AT3G17790
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Metabolism
Effect for Senescence	Unclear
Gene Description	Acid phosphatase type 5
Evidence	Molecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function acid phosphatase activity hydrolase activity
Sequence	AT3G17790.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G17790.1  miRNA: ath-miR823 miRNA: ath-miR823 mfe: -24.0 kcal/mol  p-value: 0.035015  position:  815  target 5' U G               G  A 3'             U UUGU UGGUCACCAU CA              A AAUA ACUAGUGGUG GU   miRNA  3' U G    U          G    5'
Ortholog Group
Ortholog Groups: OG5_129627	Accession Taxon NP_001077538 Arabidopsis thaliana NP_172923 Arabidopsis thaliana NP_173894 Arabidopsis thaliana NP_178297 Arabidopsis thaliana NP_178298 Arabidopsis thaliana NP_566587 ( AT3G17790 ) Arabidopsis thaliana NP_973397 Arabidopsis thaliana 98052 Chlamydomonas reinhardtii ACO61522 Micromonas sp. RCC299 ACO62641 Micromonas sp. RCC299 NP_001049500 Oryza sativa Japonica Group NP_001064054 Oryza sativa Japonica Group e_gw1.11.113.1 Physcomitrella patens subsp. patens e_gw1.86.37.1 Physcomitrella patens subsp. patens 28246.m000115 Ricinus communis 29968.m000664 Ricinus communis 29968.m000665 Ricinus communis estExt_fgenesh1_pg.C_chr_10323 Thalassiosira pseudonana CCMP1335 XP_002954764 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000898 4.8E-190 6 337 IPR024927 Acid phosphatase, type 5 PANTHER PTHR10161 1.3E-113 9 338 No hit NA SUPERFAMILY SSF56300 3.3E-67 45 331 No hit NA Pfam PF00149 1.1E-20 48 256 IPR004843 Metallophosphoesterase domain
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787