Basic information
Locus name	AT2G42780
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	unknown protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component integral to membrane
Sequence	AT2G42780.1 | Genomic | mRNA | CDS | Protein AT2G42780.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G42780.2  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -35.3 kcal/mol  p-value: 0.000031  position: 3  target 5' A                    C  3'             UUCAUCAUCAUCAUCGUCAU                 AAGUAGUAGUAGUAGUAGUA      miRNA  3' A                       5'
Ortholog Group
Ortholog Groups: OG5_164713	Accession Taxon NP_565984 ( AT2G42780 ) Arabidopsis thaliana NP_001061087 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_1520021 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1780015 Physcomitrella patens subsp. patens 29636.m000759 Ricinus communis XP_002945966 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR15141 4.9E-90 1 226 No hit NA Pfam PF06881 3.9E-32 28 143 IPR010684 RNA polymerase II transcription factor SIII, subunit A