Basic information
Locus name	AT5G18100
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:SOD
Effect for Senescence	Unclear
Gene Description	Cu/Zn superoxide dismutase-like protein
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process oxidation-reduction process superoxide metabolic process molecular function metal ion binding
Sequence	AT5G18100.1 | Genomic | mRNA | CDS | Protein AT5G18100.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G18100.1  miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol  p-value: 0.007523  position:  281  target 5' G  C            A   G G 3'             AG GUCAUGCUGGCG UUU G              UC UAGUACGACCGU GAA U   miRNA  3' A               C   G   5'  target: AT5G18100.1  miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol  p-value: 0.006715  position:  281  target 5' G  C            A   G G 3'             AG GUCAUGCUGGCG UUU G              UC UAGUACGACCGU GAA U   miRNA  3' A               C   G   5'  target: AT5G18100.1  miRNA: ath-miR167c miRNA: ath-miR167c mfe: -28.5 kcal/mol  p-value: 0.003271  position:  280  target 5' A   C            A    G 3'             GAG GUCAUGCUGGCG UUUG              UUC UAGUACGACCGU GAAU   miRNA  3' G                C      5'  target: AT5G18100.1  miRNA: ath-miR172a miRNA: ath-miR172a mfe: -25.1 kcal/mol  p-value: 0.007853  position:  483  target 5' G                 C   A 3'             AUGUGGUAUCAUCG GA UUC              UACGUCGUAGUAGU CU AAG   miRNA  3'                U      A 5'  target: AT5G18100.1  miRNA: ath-miR172b miRNA: ath-miR172b mfe: -25.1 kcal/mol  p-value: 0.008005  position:  483  target 5' G                 C   A 3'             AUGUGGUAUCAUCG GA UUC              UACGUCGUAGUAGU CU AAG   miRNA  3'                U      A 5'  target: AT5G18100.1  miRNA: ath-miR172c miRNA: ath-miR172c mfe: -24.7 kcal/mol  p-value: 0.009834  position:  484  target 5' A                C   A 3'             UGUGGUAUCAUCG GA UUC              ACGUCGUAGUAGU CU AAG   miRNA  3' G             U      A 5'  target: AT5G18100.1  miRNA: ath-miR172d miRNA: ath-miR172d mfe: -24.7 kcal/mol  p-value: 0.010700  position:  484  target 5' A                C   A 3'             UGUGGUAUCAUCG GA UUC              ACGUCGUAGUAGU CU AAG   miRNA  3' G             U      A 5'  target: AT5G18100.1  miRNA: ath-miR172e miRNA: ath-miR172e mfe: -25.4 kcal/mol  p-value: 0.006838  position:  483  target 5' G                 C   A 3'             AUGUGGUAUCAUCG GA UUC              UACGUCGUAGUAGU CU AGG   miRNA  3'                U  A     5'  target: AT5G18100.2  miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol  p-value: 0.004369  position:  281  target 5' G  C            A   G G 3'             AG GUCAUGCUGGCG UUU G              UC UAGUACGACCGU GAA U   miRNA  3' A               C   G   5'  target: AT5G18100.2  miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol  p-value: 0.003921  position:  281  target 5' G  C            A   G G 3'             AG GUCAUGCUGGCG UUU G              UC UAGUACGACCGU GAA U   miRNA  3' A               C   G   5'  target: AT5G18100.2  miRNA: ath-miR167c miRNA: ath-miR167c mfe: -28.5 kcal/mol  p-value: 0.001878  position:  280  target 5' A   C            A    G 3'             GAG GUCAUGCUGGCG UUUG              UUC UAGUACGACCGU GAAU   miRNA  3' G                C      5'
Ortholog Group
Ortholog Groups: OG5_127584	Accession Taxon NP_001077494 Arabidopsis thaliana NP_001119245 Arabidopsis thaliana NP_172360 Arabidopsis thaliana NP_197311 ( AT5G18100 ) Arabidopsis thaliana NP_565666 Arabidopsis thaliana ACO69656 Micromonas sp. RCC299 NP_001049399 Oryza sativa Japonica Group NP_001050118 Oryza sativa Japonica Group NP_001060564 Oryza sativa Japonica Group NP_001062514 Oryza sativa Japonica Group e_gw1.20.00.81.1 Ostreococcus tauri estExt_fgenesh1_pg.C_440157 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_180052 Physcomitrella patens subsp. patens fgenesh1_kg.scaffold_131000001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_131000083 Physcomitrella patens subsp. patens 29589.m001265 Ricinus communis 29950.m001121 Ricinus communis 30128.m008673 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10003 5.7E-62 8 134 IPR024134 Superoxide dismutase (Cu/Zn) / chaperones SUPERFAMILY SSF49329 1.3E-45 10 135 IPR001424 Superoxide dismutase, copper/zinc binding domain Pfam PF00080 4.4E-40 12 133 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.2E-31 49 71 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.2E-31 85 94 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.2E-31 104 126 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.2E-31 129 137 IPR001424 Superoxide dismutase, copper/zinc binding domain
Subcellular Localization
Localization 1 Localization other cytoplasmic components Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 3 Localization peroxisome Evidence SUBAcon Pubmed ID 23180787