Basic information
Locus name	AT5G55000
Alias	FIP2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	FIP2; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Pentapeptide repeat (InterPro:IPR001646), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 23935 Blast hits to 7378 proteins in 794 species: Archae - 297; Bacteria - 15780; Metazoa - 1496; Fungi - 10; Plants - 232; Viruses - 72; Other Eukaryotes - 6048 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein homooligomerization molecular function protein binding
Sequence	AT5G55000.1 | Genomic | mRNA | CDS | Protein AT5G55000.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_130849	Accession Taxon NP_200311 ( AT5G55000 ) Arabidopsis thaliana NP_851193 Arabidopsis thaliana NP_001049015 Oryza sativa Japonica Group estExt_gwp_gw1.C_1090059 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_4592000001 Physcomitrella patens subsp. patens 30072.m000962 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00225 6.2E-11 9 111 IPR000210 BTB/POZ-like SUPERFAMILY SSF54695 6.5E-27 9 105 IPR011333 BTB/POZ fold PANTHER PTHR14958 4.7E-54 11 258 No hit NA Pfam PF02214 3.9E-18 11 97 IPR003131 Potassium channel tetramerisation-type BTB domain Pfam PF00805 1.9E-8 129 165 IPR001646 Pentapeptide repeat SUPERFAMILY SSF141571 3.1E-46 129 295 No hit NA Pfam PF00805 9.6E-10 166 203 IPR001646 Pentapeptide repeat Pfam PF00805 2.6E-13 216 255 IPR001646 Pentapeptide repeat Pfam PF00805 7.0E-13 256 295 IPR001646 Pentapeptide repeat