Basic information
Locus name	AT4G25100
Alias	FSD1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process superoxide metabolic process molecular function metal ion binding superoxide dismutase activity
Sequence	AT4G25100.1 | Genomic | mRNA | CDS | Protein AT4G25100.2 | Genomic | mRNA | CDS | Protein AT4G25100.3 | Genomic | mRNA | CDS | Protein AT4G25100.4 | Genomic | mRNA | CDS | Protein AT4G25100.5 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126676	Accession Taxon NP_001030670 Arabidopsis thaliana NP_001031710 Arabidopsis thaliana NP_187703 Arabidopsis thaliana NP_191194 Arabidopsis thaliana NP_194240 ( AT4G25100 ) Arabidopsis thaliana NP_197722 Arabidopsis thaliana NP_199923 Arabidopsis thaliana NP_849440 Arabidopsis thaliana NP_849441 Arabidopsis thaliana CMN023C Cyanidioschyzon merolae strain 10D CMR158C Cyanidioschyzon merolae strain 10D CMT028C Cyanidioschyzon merolae strain 10D 182933 Chlamydomonas reinhardtii 193511 Chlamydomonas reinhardtii 53941 Chlamydomonas reinhardtii ACO69167 Micromonas sp. RCC299 NP_001055195 Oryza sativa Japonica Group NP_001056612 Oryza sativa Japonica Group NP_001056774 Oryza sativa Japonica Group gw1.02.00.483.1 Ostreococcus tauri e_gw1.174.48.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_220046 Physcomitrella patens subsp. patens gw1.2.281.1 Physcomitrella patens subsp. patens 29729.m002353 Ricinus communis 29729.m002354 Ricinus communis 29799.m000633 Ricinus communis 30147.m014368 Ricinus communis 33549.m000044 Ricinus communis e_gw1.3.524.1 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_50278 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_7000019 Thalassiosira pseudonana CCMP1335 XP_002946030 Volvox carteri f. nagariensis XP_002946031 Volvox carteri f. nagariensis XP_002958078 Volvox carteri f. nagariensis XP_002958467 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11404 2.2E-100 1 183 IPR001189 Manganese/iron superoxide dismutase Pfam PF00081 4.9E-18 1 69 IPR019831 Manganese/iron superoxide dismutase, N-terminal PIRSF PIRSF000349 1.8E-83 1 183 IPR001189 Manganese/iron superoxide dismutase SUPERFAMILY SSF46609 2.1E-24 1 70 IPR019831 Manganese/iron superoxide dismutase, N-terminal PRINTS PR01703 6.9E-15 9 22 IPR001189 Manganese/iron superoxide dismutase PRINTS PR01703 6.9E-15 52 65 IPR001189 Manganese/iron superoxide dismutase SUPERFAMILY SSF54719 1.8E-43 71 181 IPR019832 Manganese/iron superoxide dismutase, C-terminal Pfam PF02777 7.9E-39 74 177 IPR019832 Manganese/iron superoxide dismutase, C-terminal PRINTS PR01703 6.9E-15 105 113 IPR001189 Manganese/iron superoxide dismutase PRINTS PR01703 6.9E-15 141 153 IPR001189 Manganese/iron superoxide dismutase ProSitePatterns PS00088 NA 143 150 IPR019833 Manganese/iron superoxide dismutase, binding site
Subcellular Localization
Localization 1 Localization chloroplast Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 3 Localization plastid Evidence SUBAcon Pubmed ID 23180787