Basic information
Locus name	AT1G20620
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:ROS
Effect for Senescence	Unclear
Gene Description	Catalase 3
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process oxidation-reduction process response to oxidative stress molecular function catalase activity heme binding
Pathway	KEGG map00380 (EC 1.11.1.6) map00680 (EC 1.11.1.6) MetaCyc PWY-5506
Sequence	AT1G20620.1 | Genomic | mRNA | CDS | Protein AT1G20620.2 | Genomic | mRNA | CDS | Protein AT1G20620.4 | Genomic | mRNA | CDS | Protein AT1G20620.5 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G20620.1  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.8 kcal/mol  p-value: 0.044221  position:  576  target 5' A                    A 3'             GAGUA CUGGAGGAUUCUGG              UUCAU GGUCUUUUGAGAUU   miRNA  3' A     A                5'  target: AT1G20620.2  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.8 kcal/mol  p-value: 0.046769  position:  576  target 5' A                    A 3'             GAGUA CUGGAGGAUUCUGG              UUCAU GGUCUUUUGAGAUU   miRNA  3' A     A                5'  target: AT1G20620.4  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.8 kcal/mol  p-value: 0.044169  position:  574  target 5' A                    A 3'             GAGUA CUGGAGGAUUCUGG              UUCAU GGUCUUUUGAGAUU   miRNA  3' A     A                5'  target: AT1G20620.5  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.8 kcal/mol  p-value: 0.042048  position:  576  target 5' A                    A 3'             GAGUA CUGGAGGAUUCUGG              UUCAU GGUCUUUUGAGAUU   miRNA  3' A     A                5'
Ortholog Group
Ortholog Groups: OG5_127182	Accession Taxon NP_001031072 Arabidopsis thaliana NP_001031073 Arabidopsis thaliana NP_001031791 Arabidopsis thaliana NP_195235 Arabidopsis thaliana NP_564120 ( AT1G20620 ) Arabidopsis thaliana NP_564121 Arabidopsis thaliana NP_973873 Arabidopsis thaliana CMI050C Cyanidioschyzon merolae strain 10D 150104 Chlamydomonas reinhardtii NP_001045673 Oryza sativa Japonica Group NP_001048861 Oryza sativa Japonica Group NP_001058635 Oryza sativa Japonica Group e_gw1.3.315.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2590045 Physcomitrella patens subsp. patens estExt_Genewise1.C_4220004 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2920023 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_223000044 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_3000179 Physcomitrella patens subsp. patens gw1.4424.3.1 Physcomitrella patens subsp. patens 29830.m001438 Ricinus communis 30170.m014364 Ricinus communis XP_002950455 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF038928 3.2E-193 5 491 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 PANTHER PTHR11465 6.3E-280 6 489 IPR018028 Catalase, mono-functional, haem-containing SUPERFAMILY SSF56634 4.6E-204 12 489 IPR020835 Catalase-like domain ProSiteProfiles PS51402 72.3 14 492 IPR018028 Catalase, mono-functional, haem-containing Pfam PF00199 3.6E-173 18 400 IPR011614 Catalase core domain SMART SM01060 8.2E-240 18 401 IPR011614 Catalase core domain PRINTS PR00067 1.2E-78 31 54 IPR018028 Catalase, mono-functional, haem-containing PRINTS PR00067 1.2E-78 94 112 IPR018028 Catalase, mono-functional, haem-containing PRINTS PR00067 1.2E-78 115 132 IPR018028 Catalase, mono-functional, haem-containing PRINTS PR00067 1.2E-78 134 152 IPR018028 Catalase, mono-functional, haem-containing PRINTS PR00067 1.2E-78 299 326 IPR018028 Catalase, mono-functional, haem-containing PRINTS PR00067 1.2E-78 331 357 IPR018028 Catalase, mono-functional, haem-containing ProSitePatterns PS00437 NA 344 352 IPR002226 Catalase haem-binding site Pfam PF06628 2.8E-19 420 487 IPR010582 Catalase immune-responsive domain
Subcellular Localization
Localization 1 Localization mitochondria Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization peroxisome Evidence SUBAcon Pubmed ID 23180787