Basic information
Locus name	AT4G20830
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20840.1); Has 2579 Blast hits to 2500 proteins in 422 species: Archae - 14; Bacteria - 994; Metazoa - 2; Fungi - 1070; Plants - 381; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process molecular function UDP-N-acetylmuramate dehydrogenase activity flavin adenine dinucleotide binding oxidoreductase activity
Pathway	KEGG map00520 (EC 1.1.1.158) map00550 (EC 1.1.1.158) MetaCyc PWY-6386
Sequence	AT4G20830.1 | Genomic | mRNA | CDS | Protein AT4G20830.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G20830.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -28.2 kcal/mol  p-value: 0.000252  position: 71  target 5' C               C   C  3'             UUUCUUCUUCUUCUU CUC                 AAAGAAGAAGAAGAA GAG      miRNA  3' A                   U  5'  target: AT4G20830.2  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -28.2 kcal/mol  p-value: 0.000228  position: 64  target 5' C               C   C  3'             UUUCUUCUUCUUCUU CUC                 AAAGAAGAAGAAGAA GAG      miRNA  3' A                   U  5'
Ortholog Group
Ortholog Groups: OG5_138677	Accession Taxon NP_171700 Arabidopsis thaliana NP_172642 Arabidopsis thaliana NP_174357 Arabidopsis thaliana NP_174358 Arabidopsis thaliana NP_174361 Arabidopsis thaliana NP_193815 ( AT4G20830 ) Arabidopsis thaliana NP_193816 Arabidopsis thaliana NP_564449 Arabidopsis thaliana NP_974580 Arabidopsis thaliana 30075.m001140 Ricinus communis 30075.m001141 Ricinus communis 30075.m001145 Ricinus communis 30075.m001146 Ricinus communis 30075.m001147 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32448 0.0 4 541 No hit NA SUPERFAMILY SSF56176 5.1E-46 36 258 IPR016166 FAD-binding, type 2 ProSiteProfiles PS51387 16.4 83 257 IPR016166 FAD-binding, type 2 Pfam PF01565 1.1E-25 87 224 IPR006094 FAD linked oxidase, N-terminal Pfam PF08031 1.9E-21 477 534 IPR012951 Berberine/berberine-like
Subcellular Localization
Localization 1 Localization extracellular Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization plasma membrane,endoplasmic reticulum Evidence SUBAcon Pubmed ID 23180787