Basic information
Locus name	AT4G20860
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44360.1); Has 3032 Blast hits to 2927 proteins in 504 species: Archae - 28; Bacteria - 1241; Metazoa - 4; Fungi - 1147; Plants - 342; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process molecular function UDP-N-acetylmuramate dehydrogenase activity flavin adenine dinucleotide binding oxidoreductase activity
Pathway	KEGG map00520 (EC 1.1.1.158) map00550 (EC 1.1.1.158) MetaCyc PWY-6386
Sequence	AT4G20860.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_139417	Accession Taxon NP_193818 ( AT4G20860 ) Arabidopsis thaliana NP_199249 Arabidopsis thaliana NP_001057827 Oryza sativa Japonica Group NP_001057829 Oryza sativa Japonica Group NP_001057830 Oryza sativa Japonica Group NP_001057831 Oryza sativa Japonica Group NP_001057833 Oryza sativa Japonica Group NP_001067934 Oryza sativa Japonica Group estExt_fgenesh2_pg.C_1280051 Physcomitrella patens subsp. patens 30075.m001149 Ricinus communis 30075.m001156 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32448 1.7E-222 1 529 No hit NA SUPERFAMILY SSF56176 9.8E-47 37 252 IPR016166 FAD-binding, type 2 ProSiteProfiles PS51387 16.9 77 251 IPR016166 FAD-binding, type 2 Pfam PF01565 6.2E-25 81 218 IPR006094 FAD linked oxidase, N-terminal ProSitePatterns PS00862 NA 81 114 IPR006093 Oxygen oxidoreductase covalent FAD-binding site Pfam PF08031 3.1E-22 470 527 IPR012951 Berberine/berberine-like
Subcellular Localization
Localization	endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787