Basic information
Locus name	AT3G14040
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (TAIR:AT3G07850.1); Has 2542 Blast hits to 2533 proteins in 368 species: Archae - 2; Bacteria - 437; Metazoa - 8; Fungi - 1139; Plants - 880; Viruses - 4; Other Eukaryotes - 72 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function polygalacturonase activity
Sequence	AT3G14040.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_141581	Accession Taxon NP_187439 Arabidopsis thaliana NP_187440 Arabidopsis thaliana NP_187441 Arabidopsis thaliana NP_187442 Arabidopsis thaliana NP_188020 ( AT3G14040 ) Arabidopsis thaliana NP_199625 Arabidopsis thaliana NP_001043199 Oryza sativa Japonica Group NP_001046194 Oryza sativa Japonica Group NP_001057814 Oryza sativa Japonica Group NP_001057815 Oryza sativa Japonica Group NP_001057816 Oryza sativa Japonica Group NP_001058061 Oryza sativa Japonica Group 29769.m000461 Ricinus communis 29769.m00466 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31375 5.4E-189 5 444 No hit NA SUPERFAMILY SSF51126 6.6E-118 66 438 IPR011050 Pectin lyase fold/virulence factor Pfam PF00295 1.5E-107 99 429 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 840.0 221 247 IPR006626 Parallel beta-helix repeat SMART SM00710 4,100.0 248 269 IPR006626 Parallel beta-helix repeat SMART SM00710 4,000.0 271 291 IPR006626 Parallel beta-helix repeat ProSitePatterns PS00502 NA 278 291 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 1.5 301 322 IPR006626 Parallel beta-helix repeat SMART SM00710 2,500.0 331 352 IPR006626 Parallel beta-helix repeat
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787