Basic information
Locus name	AT5G63120
Alias	RH30
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ethylene-responsive DEAD box RNA helicase, putative (RH30); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (RH20) (TAIR:AT1G55150.1); Has 39371 Blast hits to 35899 proteins in 1982 species: Archae - 538; Bacteria - 14121; Metazoa - 10056; Fungi - 3867; Plants - 3106; Viruses - 71; Other Eukaryotes - 7612 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding ATP-dependent helicase activity helicase activity nucleic acid binding
Sequence	AT5G63120.1 | Genomic | mRNA | CDS | Protein AT5G63120.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126772	Accession Taxon NP_175911 Arabidopsis thaliana NP_568964 Arabidopsis thaliana NP_974985 ( AT5G63120 ) Arabidopsis thaliana CMR479C Cyanidioschyzon merolae strain 10D 131102 Chlamydomonas reinhardtii 136376 Chlamydomonas reinhardtii ACO64212 Micromonas sp. RCC299 ACO69256 Micromonas sp. RCC299 NP_001042298 Oryza sativa Japonica Group NP_001045158 Oryza sativa Japonica Group e_gw1.13.00.80.1 Ostreococcus tauri gw1.08.00.71.1 Ostreococcus tauri e_gw1.119.18.1 Physcomitrella patens subsp. patens e_gw1.119.19.1 Physcomitrella patens subsp. patens e_gw1.728.2.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_5270001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_590062 Physcomitrella patens subsp. patens 28694.m000678 Ricinus communis 29976.m000507 Ricinus communis 30131.m006913 Ricinus communis estExt_gwp_gw1.C_chr_150100 Thalassiosira pseudonana CCMP1335 XP_002955411 Volvox carteri f. nagariensis XP_002958649 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24031 1.4E-244 2 474 No hit NA SUPERFAMILY SSF52540 6.9E-76 148 372 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS51195 12.4 165 193 IPR014014 RNA helicase, DEAD-box type, Q motif SMART SM00487 3.8E-65 184 387 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00270 1.4E-46 189 359 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal ProSiteProfiles PS51192 33.7 196 371 IPR014001 Helicase, superfamily 1/2, ATP-binding domain ProSitePatterns PS00039 NA 317 325 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site SUPERFAMILY SSF52540 2.9E-22 383 474 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS51194 11.7 399 484 IPR001650 Helicase, C-terminal Pfam PF00271 1.8E-8 429 474 IPR001650 Helicase, C-terminal
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787