Basic information
Locus name	AT5G23710
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpc34-like (InterPro:IPR016049), RNA polymerase Rpc34 (InterPro:IPR007832); Has 254 Blast hits to 241 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 89; Plants - 19; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transcription, DNA-dependent molecular function DNA binding DNA-directed RNA polymerase activity
Sequence	AT5G23710.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128634	Accession Taxon NP_197760 ( AT5G23710 ) Arabidopsis thaliana CMB005C Cyanidioschyzon merolae strain 10D 155892 Chlamydomonas reinhardtii ACO64937 Micromonas sp. RCC299 NP_001058012 Oryza sativa Japonica Group e_gw1.18.00.144.1 Ostreococcus tauri estExt_fgenesh1_pg.C_120142 Physcomitrella patens subsp. patens 30190.m010921 Ricinus communis thaps1_ua_kg.chr_22000039 Thalassiosira pseudonana CCMP1335 XP_002954233 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12780 1.3E-65 1 230 IPR016049 RNA polymerase Rpc34-like PIRSF PIRSF028763 1.3E-70 1 230 IPR007832 RNA polymerase Rpc34 SUPERFAMILY SSF46785 2.2E-8 19 83 No hit NA Pfam PF05158 1.9E-16 25 121 IPR007832 RNA polymerase Rpc34 Pfam PF05158 1.4E-12 135 229 IPR007832 RNA polymerase Rpc34
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787