Basic information
Locus name	AT4G25180
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase III RPC4 family protein (TAIR:AT5G09380.1); Has 101 Blast hits to 101 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 12; Plants - 32; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transcription from RNA polymerase III promoter cellular component DNA-directed RNA polymerase III complex molecular function DNA binding DNA-directed RNA polymerase activity
Sequence	AT4G25180.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131717	Accession Taxon NP_194248 ( AT4G25180 ) Arabidopsis thaliana 154065 Chlamydomonas reinhardtii ACO68921 Micromonas sp. RCC299 NP_001045045 Oryza sativa Japonica Group 0100010334 Ostreococcus tauri 30147.m014249 Ricinus communis fgenesh1_pg.C_chr_19c_29000028 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13408 4.2E-58 6 306 IPR007811 RNA polymerase III Rpc4 Pfam PF05132 2.1E-34 191 297 IPR007811 RNA polymerase III Rpc4