Basic information
Locus name	AT4G13820
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	disease resistance family protein / LRR family protein; FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP50 (Receptor Like Protein 50); kinase/ protein binding (TAIR:AT4G13920.1); Has 52051 Blast hits to 16651 proteins in 741 species: Archae - 20; Bacteria - 2791; Metazoa - 12150; Fungi - 442; Plants - 33000; Viruses - 20; Other Eukaryotes - 3628 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT4G13820.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 Arabidopsis thaliana NP_187187 Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 ( AT4G13820 ) Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08263 3.3E-10 31 78 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 PANTHER PTHR24420 1.1E-128 88 719 No hit NA SUPERFAMILY SSF52047 2.9E-52 112 463 No hit NA Pfam PF00560 0.2 134 155 IPR001611 Leucine-rich repeat Pfam PF13504 7.7 156 173 No hit NA Pfam PF13855 3.0E-7 378 432 No hit NA SUPERFAMILY SSF52058 2.6E-35 443 643 No hit NA Pfam PF00560 0.9 519 538 IPR001611 Leucine-rich repeat Pfam PF00560 0.3 541 562 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 2.6E-35 689 718 No hit NA