|
|
| Locus name | AT4G24220 |
| Alias | VEP1/AWI31 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Environmental factors:PCD |
| Effect for Senescence | Unclear |
| Gene Description | encodes a novel protein containing mammalian death domain involved in programmed cell death. |
| Evidence | Molecular evidence: SSH and Northern [Ref 1] |
| References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
| Sequence | AT4G24220.1 | Genomic | mRNA | CDS | Protein
AT4G24220.2 | Genomic | mRNA | CDS | Protein
|
miRNA Interaction  | |
|
| Details | | target: AT4G24220.1
miRNA: ath-miR776
miRNA: ath-miR776
mfe: -23.2 kcal/mol
p-value: 0.027867
position: 1124
target 5' A U C C 3'
AGCAUC GUGGAAGAUU UAG
UUGUAG UAUCUUCUGA AUC
miRNA 3' U U 5'
target: AT4G24220.1
miRNA: ath-miR852
miRNA: ath-miR852
mfe: -26.0 kcal/mol
p-value: 0.013722
position: 1079
target 5' A A G 3'
AGAAC GAGGCGUUUA CU
UCUUG UUCCGCGAAU GA
miRNA 3' G A A A 5'
target: AT4G24220.2
miRNA: ath-miR776
miRNA: ath-miR776
mfe: -23.2 kcal/mol
p-value: 0.027804
position: 1121
target 5' A U C C 3'
AGCAUC GUGGAAGAUU UAG
UUGUAG UAUCUUCUGA AUC
miRNA 3' U U 5'
target: AT4G24220.2
miRNA: ath-miR852
miRNA: ath-miR852
mfe: -26.0 kcal/mol
p-value: 0.013693
position: 1076
target 5' A A G 3'
AGAAC GAGGCGUUUA CU
UCUUG UUCCGCGAAU GA
miRNA 3' G A A A 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_137469 | |
| Cross Link | |
|
|
|
| Localization | cytosol |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
