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Locus name | AT4G24220 |
Alias | VEP1/AWI31 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Environmental factors:PCD |
Effect for Senescence | Unclear |
Gene Description | encodes a novel protein containing mammalian death domain involved in programmed cell death. |
Evidence | Molecular evidence: SSH and Northern [Ref 1] |
References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
Sequence | AT4G24220.1 | Genomic | mRNA | CDS | Protein AT4G24220.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT4G24220.1 miRNA: ath-miR776 miRNA: ath-miR776 mfe: -23.2 kcal/mol p-value: 0.027867
position: 1124 target 5' A U C C 3' AGCAUC GUGGAAGAUU UAG UUGUAG UAUCUUCUGA AUC miRNA 3' U U 5'
target: AT4G24220.1 miRNA: ath-miR852 miRNA: ath-miR852 mfe: -26.0 kcal/mol p-value: 0.013722
position: 1079 target 5' A A G 3' AGAAC GAGGCGUUUA CU UCUUG UUCCGCGAAU GA miRNA 3' G A A A 5'
target: AT4G24220.2 miRNA: ath-miR776 miRNA: ath-miR776 mfe: -23.2 kcal/mol p-value: 0.027804
position: 1121 target 5' A U C C 3' AGCAUC GUGGAAGAUU UAG UUGUAG UAUCUUCUGA AUC miRNA 3' U U 5'
target: AT4G24220.2 miRNA: ath-miR852 miRNA: ath-miR852 mfe: -26.0 kcal/mol p-value: 0.013693
position: 1076 target 5' A A G 3' AGAAC GAGGCGUUUA CU UCUUG UUCCGCGAAU GA miRNA 3' G A A A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_137469 | |
Cross Link | |
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Localization | cytosol |
Evidence | SUBAcon |
Pubmed ID | 23180787 |