Basic information
Locus name	AT4G00660
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH12) (TAIR:AT3G61240.2); Has 29911 Blast hits to 28926 proteins in 1767 species: Archae - 415; Bacteria - 11594; Metazoa - 5504; Fungi - 3568; Plants - 1459; Viruses - 51; Other Eukaryotes - 7320 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding ATP-dependent helicase activity helicase activity nucleic acid binding
Sequence	AT4G00660.1 | Genomic | mRNA | CDS | Protein AT4G00660.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127804	Accession Taxon NP_182105 Arabidopsis thaliana NP_191683 Arabidopsis thaliana NP_191975 ( AT4G00660 ) Arabidopsis thaliana NP_849535 Arabidopsis thaliana NP_974472 Arabidopsis thaliana CML140C Cyanidioschyzon merolae strain 10D 56005 Chlamydomonas reinhardtii NP_113216 Guillardia theta ACO69358 Micromonas sp. RCC299 NP_001047552 Oryza sativa Japonica Group NP_001053408 Oryza sativa Japonica Group NP_001065000 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_06.00010292 Ostreococcus tauri e_gw1.87.104.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_80000086 Physcomitrella patens subsp. patens 30174.m009000 Ricinus communis estExt_fgenesh1_pg.C_chr_20824 Thalassiosira pseudonana CCMP1335 XP_002951166 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24031 0.0 2 503 No hit NA ProSiteProfiles PS51195 10.1 131 159 IPR014014 RNA helicase, DEAD-box type, Q motif SMART SM00487 5.0E-58 150 346 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00270 7.6E-46 156 320 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal ProSiteProfiles PS51192 29.9 162 332 IPR014001 Helicase, superfamily 1/2, ATP-binding domain SUPERFAMILY SSF52540 5.1E-70 201 485 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSitePatterns PS00039 NA 278 286 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site ProSiteProfiles PS51194 24.1 342 502 IPR001650 Helicase, C-terminal SMART SM00490 1.2E-30 382 463 IPR001650 Helicase, C-terminal Pfam PF00271 5.6E-25 388 463 IPR001650 Helicase, C-terminal
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787