Basic information
Locus name	AT5G62430
Alias	CDF1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation
Effect for Senescence	unclear
Gene Description	CYCLING DOF FACTOR 1 (CDF1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: negative regulation of transcription, regulation of timing of transition from vegetative to reproductive phase, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor (TAIR:AT3G47500.1); Has 634 Blast hits to 615 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 629; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding zinc ion binding
Sequence	AT5G62430.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G62430.1  miRNA: ath-miR5998a miRNA: ath-miR5998a mfe: -25.7 kcal/mol  p-value: 0.005137  position: 243  target 5' C             U     A  3'             CAAAACAAGACAU AACUG                 GUUUUGUUUUGUG UUGAC      miRNA  3' U             U     A  5'  target: AT5G62430.1  miRNA: ath-miR5998b miRNA: ath-miR5998b mfe: -25.7 kcal/mol  p-value: 0.003657  position: 243  target 5' C             U     A  3'             CAAAACAAGACAU AACUG                 GUUUUGUUUUGUG UUGAC      miRNA  3' U             U     A  5'
Ortholog Group
Ortholog Groups: OG5_150261	Accession Taxon NP_174211 Arabidopsis thaliana NP_180961 Arabidopsis thaliana NP_201049 ( AT5G62430 ) Arabidopsis thaliana 205894 Chlamydomonas reinhardtii ACO66508 Micromonas sp. RCC299 0400010301 Ostreococcus tauri e_gw1.149.93.1 Physcomitrella patens subsp. patens e_gw1.392.16.1 Physcomitrella patens subsp. patens 29900.m001624 Ricinus communis XP_002958128 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31089 1.2E-106 1 298 No hit NA Pfam PF02701 1.9E-35 50 109 IPR003851 Zinc finger, Dof-type ProSiteProfiles PS50884 28.3 54 108 IPR003851 Zinc finger, Dof-type ProSitePatterns PS01361 NA 56 92 IPR003851 Zinc finger, Dof-type
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787