Basic information
Locus name	AT3G51110
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 3183 Blast hits to 1420 proteins in 170 species: Archae - 2; Bacteria - 8; Metazoa - 1451; Fungi - 897; Plants - 412; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process RNA processing cellular component intracellular molecular function protein binding
Sequence	AT3G51110.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128090	Accession Taxon NP_187927 Arabidopsis thaliana NP_198992 Arabidopsis thaliana NP_199411 Arabidopsis thaliana NP_566944 ( AT3G51110 ) Arabidopsis thaliana 116356 Chlamydomonas reinhardtii ACO63341 Micromonas sp. RCC299 NP_001055097 Oryza sativa Japonica Group NP_001064359 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_07.0001000055 Ostreococcus tauri estExt_fgenesh1_pg.C_50158 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_740015 Physcomitrella patens subsp. patens 30190.m010800 Ricinus communis estExt_gwp_gw1.C_chr_60409 Thalassiosira pseudonana CCMP1335 XP_002949625 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11246 5.6E-211 1 403 No hit NA SMART SM00386 49.0 51 83 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 7.0E-33 58 244 No hit NA ProSiteProfiles PS50293 10.2 71 173 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00386 4.7E-8 85 118 IPR003107 RNA-processing protein, HAT helix SMART SM00386 8.9E-4 120 152 IPR003107 RNA-processing protein, HAT helix SMART SM00386 3.9E-5 154 185 IPR003107 RNA-processing protein, HAT helix SMART SM00386 8.5E-4 187 218 IPR003107 RNA-processing protein, HAT helix Pfam PF02184 5.1E-11 188 216 IPR003107 RNA-processing protein, HAT helix SMART SM00386 86.0 220 256 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 8.7E-5 246 301 No hit NA SMART SM00386 0.0 258 292 IPR003107 RNA-processing protein, HAT helix SUPERFAMILY SSF48452 2.7E-11 312 401 No hit NA SMART SM00386 1.9E-5 336 370 IPR003107 RNA-processing protein, HAT helix SMART SM00386 200.0 380 409 IPR003107 RNA-processing protein, HAT helix