Basic information
Locus name	AT4G25490
Alias	CBF1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	C-REPEAT/DRE BINDING FACTOR 1 (CBF1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: cold acclimation, response to water deprivation, response to cold, response to abscisic acid stimulus, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25470.1); Has 3782 Blast hits to 3708 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3775; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT4G25490.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_143059	Accession Taxon NP_001077764 Arabidopsis thaliana NP_172721 Arabidopsis thaliana NP_176491 Arabidopsis thaliana NP_200012 Arabidopsis thaliana NP_567719 Arabidopsis thaliana NP_567720 Arabidopsis thaliana NP_567721 ( AT4G25490 ) Arabidopsis thaliana NP_001047727 Oryza sativa Japonica Group NP_001053608 Oryza sativa Japonica Group NP_001056661 Oryza sativa Japonica Group 30147.m014313 Ricinus communis 30190.m011119 Ricinus communis 30190.m011120 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31839 1.6E-101 1 213 No hit NA Pfam PF00847 1.4E-15 47 96 IPR001471 AP2/ERF domain ProSiteProfiles PS51032 22.4 47 104 IPR001471 AP2/ERF domain SMART SM00380 2.6E-33 47 110 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 1.1E-21 47 106 IPR016177 DNA-binding, integrase-type PRINTS PR00367 1.1E-9 48 59 IPR001471 AP2/ERF domain PRINTS PR00367 1.1E-9 70 86 IPR001471 AP2/ERF domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787