Basic information
Locus name	AT3G29250
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	copper ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G29260.1); Has 78893 Blast hits to 78743 proteins in 2201 species: Archae - 450; Bacteria - 43823; Metazoa - 4149; Fungi - 4257; Plants - 1479; Viruses - 4; Other Eukaryotes - 24731 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metabolic process molecular function oxidoreductase activity
Sequence	AT3G29250.1 | Genomic | mRNA | CDS | Protein AT3G29250.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_149620	Accession Taxon NP_001118737 Arabidopsis thaliana NP_182234 Arabidopsis thaliana NP_182235 Arabidopsis thaliana NP_189570 ( AT3G29250 ) Arabidopsis thaliana NP_189571 Arabidopsis thaliana NP_566097 Arabidopsis thaliana NP_001051806 Oryza sativa Japonica Group 30076.m004587 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24322 2.7E-55 44 289 No hit NA SUPERFAMILY SSF51735 7.6E-70 45 293 No hit NA Pfam PF00106 1.4E-29 47 209 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 1.8E-31 48 65 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00080 8.4E-6 120 131 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 1.8E-31 120 131 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.8E-31 169 185 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00080 8.4E-6 175 183 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00080 8.4E-6 195 214 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 1.8E-31 195 214 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.8E-31 216 233 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.8E-31 254 274 IPR002347 Glucose/ribitol dehydrogenase