Basic information
Locus name	AT5G47080
Alias	CBK1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	CKB1; FUNCTIONS IN: protein kinase regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB2; protein kinase CK2 regulator (TAIR:AT4G17640.1); Has 854 Blast hits to 852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 110; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component protein kinase CK2 complex molecular function protein kinase regulator activity
Sequence	AT5G47080.1 | Genomic | mRNA | CDS | Protein AT5G47080.2 | Genomic | mRNA | CDS | Protein AT5G47080.3 | Genomic | mRNA | CDS | Protein AT5G47080.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126846	Accession Taxon NP_001032026 Arabidopsis thaliana NP_001118861 Arabidopsis thaliana NP_181996 Arabidopsis thaliana NP_191584 Arabidopsis thaliana NP_193499 Arabidopsis thaliana NP_199519 ( AT5G47080 ) Arabidopsis thaliana NP_850421 Arabidopsis thaliana NP_974896 Arabidopsis thaliana CMM005C Cyanidioschyzon merolae strain 10D 116537 Chlamydomonas reinhardtii ACO68894 Micromonas sp. RCC299 NP_001059693 Oryza sativa Japonica Group NP_001065415 Oryza sativa Japonica Group gw1.02.00.464.1 Ostreococcus tauri e_gw1.15.274.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1690113 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_54000036 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_177000002 Physcomitrella patens subsp. patens 29709.m001188 Ricinus communis 29822.m003509 Ricinus communis gw1.20.96.1 Thalassiosira pseudonana CCMP1335 gw1.4.466.1 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11740 6.2E-134 1 281 IPR000704 Casein kinase II, regulatory subunit SUPERFAMILY SSF57798 9.3E-80 98 281 IPR000704 Casein kinase II, regulatory subunit Pfam PF01214 1.8E-77 100 278 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 100 116 IPR000704 Casein kinase II, regulatory subunit SMART SM01085 7.7E-127 100 278 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 117 131 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 167 188 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 192 213 IPR000704 Casein kinase II, regulatory subunit ProSitePatterns PS01101 NA 196 227 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 214 235 IPR000704 Casein kinase II, regulatory subunit PRINTS PR00472 2.4E-66 242 259 IPR000704 Casein kinase II, regulatory subunit
Subcellular Localization
Localization	other cytoplasmic components
Evidence	Localization with GFP-fusion protein (GFP:cDNA)
Pubmed ID	10737809