Basic information
Locus name	AT3G58750
Alias	CYS2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	citrate synthase 2 (CSY2); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY3 (citrate synthase 3); citrate (SI)-synthase (TAIR:AT2G42790.1); Has 9667 Blast hits to 9665 proteins in 2018 species: Archae - 111; Bacteria - 5064; Metazoa - 281; Fungi - 216; Plants - 98; Viruses - 0; Other Eukaryotes - 3897 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process cellular carbohydrate metabolic process molecular function transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Pathway	KEGG map00020 (EC 2.3.3.1) map00630 (EC 2.3.3.1) MetaCyc PWY-5750
Sequence	AT3G58750.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G58750.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -30.5 kcal/mol  p-value: 0.000060  position: 154  target 5' G                  C  3'             UUUCUUCUUCUUCUUCUU                 AAAGAAGAAGAAGAAGAG      miRNA  3' A                  U  5'
Ortholog Group
Ortholog Groups: OG5_128590	Accession Taxon NP_181807 Arabidopsis thaliana NP_191433 Arabidopsis thaliana NP_191434 ( AT3G58750 ) Arabidopsis thaliana CMA040C Cyanidioschyzon merolae strain 10D CMJ293C Cyanidioschyzon merolae strain 10D 24263 Chlamydomonas reinhardtii ACO63921 Micromonas sp. RCC299 ACO70559 Micromonas sp. RCC299 NP_001046373 Oryza sativa Japonica Group e_gw1.17.00.49.1 Ostreococcus tauri e_gw1.10.51.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_560152 Physcomitrella patens subsp. patens 29176.m000137 Ricinus communis XP_002954665 Volvox carteri f. nagariensis XP_002960009 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11739 1.0E-209 38 511 IPR002020 Citrate synthase-like PIRSF PIRSF001369 9.4E-174 51 485 IPR024176 Citrate synthase, bacterial-type SUPERFAMILY SSF48256 1.3E-143 72 484 IPR016141 Citrate synthase-like, core Pfam PF00285 1.2E-128 98 466 IPR002020 Citrate synthase-like PRINTS PR00143 9.0E-46 224 237 IPR002020 Citrate synthase-like PRINTS PR00143 9.0E-46 278 293 IPR002020 Citrate synthase-like PRINTS PR00143 9.0E-46 300 328 IPR002020 Citrate synthase-like PRINTS PR00143 9.0E-46 353 373 IPR002020 Citrate synthase-like ProSitePatterns PS00480 NA 360 372 IPR019810 Citrate synthase active site PRINTS PR00143 9.0E-46 415 431 IPR002020 Citrate synthase-like PRINTS PR00143 9.0E-46 435 449 IPR002020 Citrate synthase-like
Subcellular Localization
Localization	peroxisome
Evidence	SUBAcon
Pubmed ID	23180787