Leaf Senescence DataBase

Basic information

Locus name

AT4G09760

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

choline kinase, putative; FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATCK1 (CHOLINE KINASE 1); choline kinase (TAIR:AT1G71697.1); Has 1158 Blast hits to 1106 proteins in 242 species: Archae - 0; Bacteria - 225; Metazoa - 383; Fungi - 162; Plants - 83; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	glycerophospholipid biosynthetic process
molecular function	kinase activity transferase activity, transferring phosphorus-containing groups

Sequence

Ortholog Group

Ortholog Groups: OG5_127835

Accession	Taxon
NP_177315	Arabidopsis thaliana
NP_177572	Arabidopsis thaliana
NP_192714 ( AT4G09760 )	Arabidopsis thaliana
NP_849350	Arabidopsis thaliana
NP_001042223	Oryza sativa Japonica Group
NP_001044073	Oryza sativa Japonica Group
fgenesh1_pm.scaffold_194000007	Physcomitrella patens subsp. patens
29686.m000858	Ricinus communis
29863.m001111	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR22603	6.1E-66	15	223	IPR026712	Choline/Ethanolamine kinase
SUPERFAMILY	SSF56112	1.3E-49	15	223	IPR011009	Protein kinase-like domain
Pfam	PF01633	6.1E-45	66	223	No hit	NA
Coils	Coil	NA	179	200	No hit	NA