Basic information
Locus name	AT5G02590
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	chloroplast lumen common family protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT3G53560.1); Has 1473 Blast hits to 1231 proteins in 255 species: Archae - 99; Bacteria - 618; Metazoa - 200; Fungi - 8; Plants - 69; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT5G02590.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128428	Accession Taxon NP_568104 ( AT5G02590 ) Arabidopsis thaliana CML093C Cyanidioschyzon merolae strain 10D
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR26312 3.0E-115 31 320 No hit NA SUPERFAMILY SSF48452 2.5E-14 112 296 No hit NA ProSiteProfiles PS50005 8.5 129 162 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50293 19.8 129 304 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00028 20.0 129 162 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50005 6.2 163 196 IPR019734 Tetratricopeptide repeat Coils Coil NA 207 235 No hit NA ProSiteProfiles PS50005 6.0 237 270 IPR019734 Tetratricopeptide repeat Pfam PF13174 0.9 240 269 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50005 7.2 271 304 IPR019734 Tetratricopeptide repeat SMART SM00028 15.0 271 304 IPR019734 Tetratricopeptide repeat
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787