Basic information
Locus name	AT4G28940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: phosphorylase family protein (TAIR:AT4G24340.1); Has 1779 Blast hits to 1414 proteins in 613 species: Archae - 0; Bacteria - 1669; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process nucleoside metabolic process molecular function catalytic activity
Sequence	AT4G28940.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_190451	Accession Taxon NP_194623 ( AT4G28940 ) Arabidopsis thaliana NP_001054970 Oryza sativa Japonica Group 29794.m003427 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21234 1.5E-209 4 348 IPR018017 Nucleoside phosphorylase SUPERFAMILY SSF53167 7.8E-40 41 162 No hit NA Pfam PF01048 7.0E-42 44 336 IPR000845 Nucleoside phosphorylase domain SUPERFAMILY SSF53167 7.8E-40 212 345 No hit NA