Basic information
Locus name	AT3G24730
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis; LOCATED IN: spliceosome; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: YLS8; catalytic (TAIR:AT5G08290.1); Has 375 Blast hits to 375 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 94; Plants - 61; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process mitosis cellular component spliceosomal complex
Sequence	AT3G24730.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_136649	Accession Taxon NP_189117 ( AT3G24730 ) Arabidopsis thaliana NP_001067727 Oryza sativa Japonica Group fgenesh1_pm.scaffold_12000025 Physcomitrella patens subsp. patens 30204.m001788 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF017199 1.1E-81 8 152 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP PANTHER PTHR12052 2.0E-98 10 152 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP Pfam PF02966 1.4E-50 12 145 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP SUPERFAMILY SSF52833 9.4E-20 13 146 IPR012336 Thioredoxin-like fold