Basic information
Locus name	AT1G18210
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Unknown
Effect for Senescence	Unclear
Gene Description	calcium-binding protein, putative.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	molecular function calcium ion binding
Sequence	AT1G18210.1 | Genomic | mRNA | CDS | Protein AT1G18210.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G18210.1  miRNA: ath-miR2936 miRNA: ath-miR2936 mfe: -26.5 kcal/mol  p-value: 0.006396  position:  503  target 5' A       C             C 3'             CGUC GU UUCUCUC CUCAA              GCAG CA AAGAGAG GAGUU   miRNA  3'      A  C       A     C 5'  target: AT1G18210.2  miRNA: ath-miR2936 miRNA: ath-miR2936 mfe: -26.5 kcal/mol  p-value: 0.004491  position:  503  target 5' A       C             C 3'             CGUC GU UUCUCUC CUCAA              GCAG CA AAGAGAG GAGUU   miRNA  3'      A  C       A     C 5'
Ortholog Group
Ortholog Groups: OG5_189752	Accession Taxon NP_173259 Arabidopsis thaliana NP_177504 Arabidopsis thaliana NP_849686 ( AT1G18210 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF47473 2.3E-43 8 154 No hit NA PANTHER PTHR10891 1.5E-72 12 162 No hit NA ProSiteProfiles PS50222 15.2 19 54 IPR002048 EF-hand domain SMART SM00054 1.3E-4 23 51 IPR002048 EF-hand domain Pfam PF13499 1.1E-13 24 83 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 32 44 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 8.7 55 85 IPR002048 EF-hand domain SMART SM00054 5.6E-5 59 87 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 68 80 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 14.7 88 123 IPR002048 EF-hand domain SMART SM00054 2.1E-5 92 120 IPR002048 EF-hand domain Pfam PF13499 6.9E-12 93 153 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 101 113 IPR018247 EF-Hand 1, calcium-binding site SMART SM00054 0.0 128 156 IPR002048 EF-hand domain ProSiteProfiles PS50222 10.1 136 159 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 137 149 IPR018247 EF-Hand 1, calcium-binding site
Subcellular Localization
Localization 1 Localization plasma membrane Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787