Basic information
Locus name	AT4G02860
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: phenazine biosynthesis PhzC/PhzF family protein (TAIR:AT1G03210.1); Has 2440 Blast hits to 2438 proteins in 667 species: Archae - 24; Bacteria - 1589; Metazoa - 100; Fungi - 81; Plants - 45; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process biosynthetic process molecular function catalytic activity
Pathway	KEGG map00520 (EC 5.1.-.-) map00960 (EC 5.1.-.-)
Sequence	AT4G02860.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_128465	Accession Taxon NP_171820 Arabidopsis thaliana NP_192194 Arabidopsis thaliana NP_192195 ( AT4G02860 ) Arabidopsis thaliana 146632 Chlamydomonas reinhardtii 151272 Chlamydomonas reinhardtii ACO64651 Micromonas sp. RCC299 NP_001042679 Oryza sativa Japonica Group NP_001050433 Oryza sativa Japonica Group e_gw1.170.30.1 Physcomitrella patens subsp. patens e_gw1.27.215.1 Physcomitrella patens subsp. patens gw1.30.103.1 Physcomitrella patens subsp. patens 29647.m002111 Ricinus communis 29647.m002112 Ricinus communis estExt_fgenesh1_pg.C_chr_40874 Thalassiosira pseudonana CCMP1335 XP_002953896 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13774 4.6E-124 10 313 IPR003719 Phenazine biosynthesis PhzF protein PIRSF PIRSF016184 3.3E-33 23 313 IPR003719 Phenazine biosynthesis PhzF protein SUPERFAMILY SSF54506 1.1E-73 26 312 No hit NA TIGRFAM TIGR00654 5.6E-36 27 311 IPR003719 Phenazine biosynthesis PhzF protein Pfam PF02567 2.7E-103 31 309 IPR003719 Phenazine biosynthesis PhzF protein
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787