Basic information
Locus name	AT4G15093
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	catalytic LigB subunit of aromatic ring-opening dioxygenase family; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, ferrous iron binding, zinc ion binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extradiol aromatic ring-opening dioxygenase, DODA type (InterPro:IPR014436), Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (InterPro:IPR004183); Has 1178 Blast hits to 1178 proteins in 524 species: Archae - 20; Bacteria - 875; Metazoa - 2; Fungi - 120; Plants - 49; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process cellular aromatic compound metabolic process oxidation-reduction process molecular function ferrous iron binding oxidoreductase activity, acting on single donors with incorporation of molecular oxygen oxidoreductase activity zinc ion binding
Pathway	KEGG map00363 (EC 1.13.-.-) map00626 (EC 1.13.-.-)
Sequence	AT4G15093.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129573	Accession Taxon NP_567456 ( AT4G15093 ) Arabidopsis thaliana 130920 Chlamydomonas reinhardtii ACO60853 Micromonas sp. RCC299 NP_001044982 Oryza sativa Japonica Group NP_001044983 Oryza sativa Japonica Group estExt_gwp_gw1.C_4260002 Physcomitrella patens subsp. patens 29983.m003298 Ricinus communis e_gw1.13.138.1 Thalassiosira pseudonana CCMP1335 XP_002954432 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR30096 2.4E-108 1 269 No hit NA PIRSF PIRSF006157 1.5E-153 2 267 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type Pfam PF02900 4.6E-70 7 265 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B SUPERFAMILY SSF53213 2.8E-91 7 265 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B