Basic information
Locus name	AT2G23980
Alias	ATCNGC6
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	Unclear
Gene Description	member of Cyclic nucleotide gated channel family
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process potassium ion transport cellular component membrane molecular function voltage-gated potassium channel activity
Sequence	AT2G23980.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G23980.1  miRNA: ath-miR399b miRNA: ath-miR399b mfe: -30.8 kcal/mol  p-value: 0.005694  position:  1198  target 5' A  A           C     U 3'             AG GC ACUCUCCU UGGCA              UC CG UGAGAGGA ACCGU   miRNA  3' G  C  U        A       5'  target: AT2G23980.1  miRNA: ath-miR399c miRNA: ath-miR399c mfe: -30.8 kcal/mol  p-value: 0.007468  position:  1198  target 5' A  A           C     U 3'             AG GC ACUCUCCU UGGCA              UC CG UGAGAGGA ACCGU   miRNA  3' G  C  U        A       5'  target: AT2G23980.1  miRNA: ath-miR776 miRNA: ath-miR776 mfe: -28.6 kcal/mol  p-value: 0.002121  position:  2037  target 5' C   G                C 3'             ACA CAAUGGAGGACUUGGG              UGU GUUAUCUUCUGAAUCU   miRNA  3' U   A                  5'  target: AT2G23980.1  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -21.1 kcal/mol  p-value: 0.095249  position:  1972  target 5' A   G   C             G 3'             UUC UGG AAGCCA GUUCAG              AAG AUU UUUGGU CAAGUU   miRNA  3'     G   A      A        5'
Ortholog Group
Ortholog Groups: OG5_131975	Accession Taxon NP_001118537 Arabidopsis thaliana NP_173051 Arabidopsis thaliana NP_173408 Arabidopsis thaliana NP_180393 Arabidopsis thaliana NP_182167 Arabidopsis thaliana NP_190384 Arabidopsis thaliana NP_192010 Arabidopsis thaliana NP_194765 Arabidopsis thaliana NP_194785 Arabidopsis thaliana NP_196991 Arabidopsis thaliana NP_200125 Arabidopsis thaliana NP_200602 Arabidopsis thaliana NP_563625 Arabidopsis thaliana NP_565560 ( AT2G23980 ) Arabidopsis thaliana NP_566075 Arabidopsis thaliana NP_850056 Arabidopsis thaliana NP_850454 Arabidopsis thaliana NP_851209 Arabidopsis thaliana NP_974953 Arabidopsis thaliana NP_001047485 Oryza sativa Japonica Group NP_001048351 Oryza sativa Japonica Group NP_001050768 Oryza sativa Japonica Group NP_001057767 Oryza sativa Japonica Group NP_001063911 Oryza sativa Japonica Group NP_001066227 Oryza sativa Japonica Group e_gw1.37.28.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1830065 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_68000055 Physcomitrella patens subsp. patens gw1.211.12.1 Physcomitrella patens subsp. patens 27538.m000318 Ricinus communis 29687.m000571 Ricinus communis 29742.m001433 Ricinus communis 29822.m003360 Ricinus communis 29848.m004476 Ricinus communis 30131.m006865 Ricinus communis 30147.m013975 Ricinus communis 30169.m006518 Ricinus communis estExt_fgenesh1_pg.C_chr_40508 Thalassiosira pseudonana CCMP1335 XP_002959718 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10217 0.0 94 681 No hit NA SUPERFAMILY SSF81324 8.6E-34 106 304 No hit NA Pfam PF00520 2.3E-21 158 431 IPR005821 Ion transport domain PRINTS PR01463 1.1E-5 170 179 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG SUPERFAMILY SSF81324 8.6E-34 376 436 No hit NA PRINTS PR01463 1.1E-5 383 400 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG PRINTS PR01463 1.1E-5 409 420 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG PRINTS PR01463 1.1E-5 427 436 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG SUPERFAMILY SSF51206 2.2E-34 443 633 IPR018490 Cyclic nucleotide-binding-like PRINTS PR01463 1.1E-5 477 484 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG ProSiteProfiles PS50042 13.1 514 598 IPR000595 Cyclic nucleotide-binding domain SMART SM00100 8.5E-13 514 645 IPR000595 Cyclic nucleotide-binding domain Pfam PF00027 1.2E-7 535 629 IPR000595 Cyclic nucleotide-binding domain ProSiteProfiles PS50096 8.0 650 679 IPR000048 IQ motif, EF-hand binding site Coils Coil NA 667 688 No hit NA
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787