Basic information
Locus name	AT5G21274
Alias	CAM6
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	CALMODULIN 6 (CAM6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM7 (CALMODULIN 7); calcium ion binding (TAIR:AT3G43810.1); Has 26893 Blast hits to 18279 proteins in 1447 species: Archae - 0; Bacteria - 129; Metazoa - 12479; Fungi - 5962; Plants - 4210; Viruses - 0; Other Eukaryotes - 4113 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT5G21274.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126800	Accession Taxon NP_176814 Arabidopsis thaliana NP_180271 Arabidopsis thaliana NP_189967 Arabidopsis thaliana NP_191239 Arabidopsis thaliana NP_198594 Arabidopsis thaliana NP_850097 Arabidopsis thaliana NP_850344 Arabidopsis thaliana NP_850860 ( AT5G21274 ) Arabidopsis thaliana CME034C Cyanidioschyzon merolae strain 10D 188144 Chlamydomonas reinhardtii ACO68388 Micromonas sp. RCC299 NP_001041950 Oryza sativa Japonica Group NP_001042688 Oryza sativa Japonica Group NP_001042747 Oryza sativa Japonica Group NP_001049948 Oryza sativa Japonica Group NP_001055907 Oryza sativa Japonica Group NP_001060691 Oryza sativa Japonica Group estExt_genewise1.C_Chr_01.00010612 Ostreococcus tauri e_gw1.18.155.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_580192 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_320188 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_400081 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_790150 Physcomitrella patens subsp. patens 29828.m000387 Ricinus communis 29927.m000591 Ricinus communis 30089.m000988 Ricinus communis estExt_fgenesh1_pg.C_chr_70193 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_70116 Thalassiosira pseudonana CCMP1335 XP_002946692 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23050 1.0E-109 1 149 No hit NA SUPERFAMILY SSF47473 5.1E-57 2 147 No hit NA ProSiteProfiles PS50222 16.7 8 43 IPR002048 EF-hand domain SMART SM00054 6.9E-8 12 40 IPR002048 EF-hand domain Pfam PF13499 6.7E-15 14 73 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 21 33 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 14.5 44 79 IPR002048 EF-hand domain SMART SM00054 2.5E-8 48 76 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 57 69 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 17.6 81 116 IPR002048 EF-hand domain SMART SM00054 3.1E-8 85 113 IPR002048 EF-hand domain Pfam PF13499 6.1E-21 86 146 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 94 106 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 15.3 117 149 IPR002048 EF-hand domain SMART SM00054 3.0E-9 121 149 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 130 142 IPR018247 EF-Hand 1, calcium-binding site