Basic information
Locus name	AT4G03290
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G05990.1); Has 19122 Blast hits to 13539 proteins in 1298 species: Archae - 0; Bacteria - 128; Metazoa - 8984; Fungi - 3440; Plants - 3328; Viruses - 0; Other Eukaryotes - 3242 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT4G03290.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_147166	Accession Taxon NP_172089 Arabidopsis thaliana NP_187405 Arabidopsis thaliana NP_191503 Arabidopsis thaliana NP_192238 ( AT4G03290 ) Arabidopsis thaliana NP_193022 Arabidopsis thaliana NP_565996 Arabidopsis thaliana NP_001047379 Oryza sativa Japonica Group NP_001053179 Oryza sativa Japonica Group NP_001066440 Oryza sativa Japonica Group 29569.m000145 Ricinus communis 30178.m000860 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50222 14.4 1 36 IPR002048 EF-hand domain PANTHER PTHR10891 1.3E-87 5 152 No hit NA SMART SM00054 6.7E-5 5 33 IPR002048 EF-hand domain SUPERFAMILY SSF47473 1.2E-40 5 146 No hit NA Pfam PF13499 1.4E-13 6 64 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 14 26 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 13.7 37 72 IPR002048 EF-hand domain SMART SM00054 2.5E-4 41 69 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 50 62 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 17.1 77 112 IPR002048 EF-hand domain SMART SM00054 9.8E-8 81 109 IPR002048 EF-hand domain Pfam PF13499 7.5E-15 82 144 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 90 102 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 13.4 115 150 IPR002048 EF-hand domain SMART SM00054 3.1E-5 119 147 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 128 140 IPR018247 EF-Hand 1, calcium-binding site
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787