Basic information
Locus name	AT3G25600
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G18530.1); Has 18765 Blast hits to 12295 proteins in 1258 species: Archae - 0; Bacteria - 92; Metazoa - 7486; Fungi - 4854; Plants - 3473; Viruses - 0; Other Eukaryotes - 2860 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT3G25600.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_170316	Accession Taxon NP_173288 Arabidopsis thaliana NP_189188 ( AT3G25600 ) Arabidopsis thaliana NP_001043511 Oryza sativa Japonica Group NP_001056407 Oryza sativa Japonica Group 30138.m003833 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF47473 2.4E-40 5 149 No hit NA PANTHER PTHR10891 1.5E-98 8 157 No hit NA ProSiteProfiles PS50222 14.2 8 43 IPR002048 EF-hand domain Pfam PF13499 2.4E-11 12 72 IPR011992 EF-hand-like domain SMART SM00054 0.0 12 40 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 21 33 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 8.8 44 79 IPR002048 EF-hand domain SMART SM00054 3.7 48 76 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 57 69 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 14.5 83 118 IPR002048 EF-hand domain Pfam PF13499 1.3E-15 87 148 IPR011992 EF-hand-like domain SMART SM00054 0.0 87 115 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 96 108 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 12.3 119 154 IPR002048 EF-hand domain SMART SM00054 9.9E-7 123 151 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 132 144 IPR018247 EF-Hand 1, calcium-binding site