Basic information
Locus name	AT5G49480
Alias	ATCP1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	Ca2+-binding protein 1 (ATCP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM1 (CALMODULIN 1); calcium ion binding (TAIR:AT5G37780.1); Has 6591 Blast hits to 6281 proteins in 969 species: Archae - 0; Bacteria - 25; Metazoa - 2805; Fungi - 1364; Plants - 1484; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function calcium ion binding
Sequence	AT5G49480.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_190694	Accession Taxon NP_199759 ( AT5G49480 ) Arabidopsis thaliana NP_001049918 Oryza sativa Japonica Group 29889.m003315 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10891 2.0E-96 6 160 No hit NA SUPERFAMILY SSF47473 2.8E-27 17 158 No hit NA SMART SM00054 0.0 18 46 IPR002048 EF-hand domain Pfam PF13499 7.1E-10 22 79 IPR011992 EF-hand-like domain ProSiteProfiles PS50222 10.1 22 49 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 27 39 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 11.6 52 87 IPR002048 EF-hand domain SMART SM00054 0.0 56 84 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 65 77 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 12.5 93 128 IPR002048 EF-hand domain SMART SM00054 0.0 97 125 IPR002048 EF-hand domain Pfam PF13499 1.5E-8 99 153 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 106 118 IPR018247 EF-Hand 1, calcium-binding site
Subcellular Localization
Localization	cytosol,plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787