Basic information
Locus name	AT5G19000
Alias	ATBPM1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	BTB-POZ and MATH domain 1 (ATBPM1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot, male gametophyte, flower, root, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding (TAIR:AT3G06190.1); Has 4702 Blast hits to 4630 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3617; Fungi - 41; Plants - 884; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT5G19000.1 | Genomic | mRNA | CDS | Protein AT5G19000.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128326	Accession Taxon NP_001031516 Arabidopsis thaliana NP_030522 Arabidopsis thaliana NP_197401 ( AT5G19000 ) Arabidopsis thaliana NP_566275 Arabidopsis thaliana 175298 Chlamydomonas reinhardtii ACO66635 Micromonas sp. RCC299 NP_001058677 Oryza sativa Japonica Group NP_001060495 Oryza sativa Japonica Group NP_001061285 Oryza sativa Japonica Group NP_001061287 Oryza sativa Japonica Group NP_001061288 Oryza sativa Japonica Group NP_001061289 Oryza sativa Japonica Group NP_001064635 Oryza sativa Japonica Group NP_001064636 Oryza sativa Japonica Group NP_001064637 Oryza sativa Japonica Group NP_001064638 Oryza sativa Japonica Group NP_001064640 Oryza sativa Japonica Group NP_001064641 Oryza sativa Japonica Group NP_001064642 Oryza sativa Japonica Group NP_001064643 Oryza sativa Japonica Group NP_001064644 Oryza sativa Japonica Group NP_001064646 Oryza sativa Japonica Group NP_001064648 Oryza sativa Japonica Group NP_001064649 Oryza sativa Japonica Group NP_001064650 Oryza sativa Japonica Group NP_001064654 Oryza sativa Japonica Group NP_001064655 Oryza sativa Japonica Group NP_001064656 Oryza sativa Japonica Group NP_001064657 Oryza sativa Japonica Group NP_001064671 Oryza sativa Japonica Group NP_001068302 Oryza sativa Japonica Group gw1.14.00.143.1 Ostreococcus tauri e_gw1.205.34.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1480036 Physcomitrella patens subsp. patens estExt_Genewise1.C_3490001 Physcomitrella patens subsp. patens 29703.m001550 Ricinus communis 29726.m003917 Ricinus communis 30072.m000949 Ricinus communis 30143.m001182 Ricinus communis XP_002954685 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF49599 2.5E-35 30 169 IPR008974 TRAF-like ProSiteProfiles PS50144 22.8 33 167 IPR002083 MATH SMART SM00061 2.8E-11 38 150 IPR002083 MATH Pfam PF00917 9.2E-7 51 167 IPR002083 MATH SUPERFAMILY SSF54695 1.8E-31 179 310 IPR011333 BTB/POZ fold Pfam PF00651 8.5E-25 195 310 IPR013069 BTB/POZ ProSiteProfiles PS50097 17.3 203 270 IPR000210 BTB/POZ-like SMART SM00225 5.0E-25 203 312 IPR000210 BTB/POZ-like PANTHER PTHR26379 8.8E-45 204 370 No hit NA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787