Basic information
Locus name	AT5G54250
Alias	ATCNGC4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	Unclear
Gene Description	member of Cyclic nucleotide gated channel family,
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Sequence	AT5G54250.1 | Genomic | mRNA | CDS | Protein AT5G54250.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G54250.1  miRNA: ath-miR167c miRNA: ath-miR167c mfe: -26.2 kcal/mol  p-value: 0.033363  position:  912  target 5' G     G               U 3'             CAGGA CGUGUUGGUA CUUG              GUUCU GUACGACCGU GAAU   miRNA  3'       A          C      5'  target: AT5G54250.1  miRNA: ath-miR2111b miRNA: ath-miR2111b mfe: -25.8 kcal/mol  p-value: 0.018975  position:  552  target 5' C     C           C   G 3'             GGUGG CU UAUCCCGG GGA              CCAUU GA AUAGGGCU CCU   miRNA  3'       U  C            A 5'  target: AT5G54250.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -25.0 kcal/mol  p-value: 0.047401  position:  186  target 5' G  G          A   A   A 3'             AU AAGAAGAAGA GAG UGG              UA UUCUUCUUCU CUC ACU   miRNA  3' G  G          C         5'  target: AT5G54250.2  miRNA: ath-miR167c miRNA: ath-miR167c mfe: -26.2 kcal/mol  p-value: 0.035518  position:  912  target 5' G     G               U 3'             CAGGA CGUGUUGGUA CUUG              GUUCU GUACGACCGU GAAU   miRNA  3'       A          C      5'  target: AT5G54250.2  miRNA: ath-miR2111b miRNA: ath-miR2111b mfe: -25.8 kcal/mol  p-value: 0.020579  position:  552  target 5' C     C           C   G 3'             GGUGG CU UAUCCCGG GGA              CCAUU GA AUAGGGCU CCU   miRNA  3'       U  C            A 5'  target: AT5G54250.2  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -25.0 kcal/mol  p-value: 0.050524  position:  186  target 5' G  G          A   A   A 3'             AU AAGAAGAAGA GAG UGG              UA UUCUUCUUCU CUC ACU   miRNA  3' G  G          C         5'
Ortholog Group
Ortholog Groups: OG5_150351	Accession Taxon NP_197045 Arabidopsis thaliana NP_200236 ( AT5G54250 ) Arabidopsis thaliana NP_851188 Arabidopsis thaliana NP_974783 Arabidopsis thaliana NP_001051331 Oryza sativa Japonica Group NP_001055973 Oryza sativa Japonica Group fgenesh2_pg.scaffold_99000010 Physcomitrella patens subsp. patens gw1.90.40.1 Physcomitrella patens subsp. patens 28124.m000232 Ricinus communis 30027.m000817 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10217 0.0 1 680 No hit NA Coils Coil NA 25 53 No hit NA SUPERFAMILY SSF81324 6.3E-19 81 287 No hit NA SUPERFAMILY SSF81324 6.3E-19 359 417 No hit NA SUPERFAMILY SSF51206 8.8E-35 422 610 IPR018490 Cyclic nucleotide-binding-like ProSiteProfiles PS50042 11.9 496 606 IPR000595 Cyclic nucleotide-binding domain SMART SM00100 0.0 496 625 IPR000595 Cyclic nucleotide-binding domain Pfam PF00027 1.9E-7 517 608 IPR000595 Cyclic nucleotide-binding domain
Subcellular Localization
Localization 1 Localization other cytoplasmic components Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization plasma membrane Evidence SUBAcon Pubmed ID 23180787