Basic information   
Locus name AT5G16840
AliasBPA1
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionBINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 278 Blast hits to 278 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 17; Fungi - 81; Plants - 165; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT5G16840.1 | Genomic | mRNA | CDS | Protein
AT5G16840.2 | Genomic | mRNA | CDS | Protein
AT5G16840.3 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_132162
AccessionTaxon
NP_001078595 ( AT5G16840 ) Arabidopsis thaliana
NP_001078596Arabidopsis thaliana
NP_197186Arabidopsis thaliana
NP_199498Arabidopsis thaliana
NP_567536Arabidopsis thaliana
CMQ106CCyanidioschyzon merolae strain 10D
NP_001051073Oryza sativa Japonica Group
NP_001053727Oryza sativa Japonica Group
NP_001053934Oryza sativa Japonica Group
NP_001056594Oryza sativa Japonica Group
0100010283Ostreococcus tauri
estExt_Genewise1.C_1000095Physcomitrella patens subsp. patens
estExt_Genewise1.C_170120Physcomitrella patens subsp. patens
gw1.174.82.1Physcomitrella patens subsp. patens
gw1.49.184.1Physcomitrella patens subsp. patens
gw1.9.313.1Physcomitrella patens subsp. patens
29682.m000595Ricinus communis
30073.m002271Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF549288.8E-16481No hitNA
ProSiteProfilesPS5010212.9677IPR000504RNA recognition motif domain
SMARTSM003601.7E-10773IPR000504RNA recognition motif domain
PfamPF000764.3E-10967IPR000504RNA recognition motif domain