Basic information
Locus name	AT5G55700
Alias	BAM4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	BETA-AMYLASE 4 (BAM4); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (TAIR:AT4G17090.1); Has 515 Blast hits to 514 proteins in 119 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 387; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process polysaccharide catabolic process molecular function beta-amylase activity
Pathway	KEGG map00500 (EC 3.2.1.2) MetaCyc PWY-842
Sequence	AT5G55700.1 | Genomic | mRNA | CDS | Protein AT5G55700.2 | Genomic | mRNA | CDS | Protein
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF51445 1.8E-122 89 488 IPR017853 Glycoside hydrolase, superfamily PANTHER PTHR31352 9.5E-116 158 486 No hit NA Pfam PF01373 4.7E-61 160 481 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00842 4.3E-5 213 222 IPR001371 Glycoside hydrolase, family 14B, plant PRINTS PR00750 1.0E-21 223 245 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00750 1.0E-21 341 357 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00750 1.0E-21 358 369 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00750 1.0E-21 376 399 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00842 4.3E-5 379 389 IPR001371 Glycoside hydrolase, family 14B, plant PRINTS PR00750 1.0E-21 413 435 IPR001554 Glycoside hydrolase, family 14 PRINTS PR00842 4.3E-5 461 475 IPR001371 Glycoside hydrolase, family 14B, plant PRINTS PR00842 4.3E-5 476 489 IPR001371 Glycoside hydrolase, family 14B, plant
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787