Basic information
Locus name	AT2G39900
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Unknown
Effect for Senescence	Unclear
Gene Description	LIM domain-containing protein
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	molecular function zinc ion binding
Sequence	AT2G39900.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G39900.1  miRNA: ath-miR4239 miRNA: ath-miR4239 mfe: -27.7 kcal/mol  p-value: 0.002727  position: 261  target 5' A                   U  3'             GGGCGUGCGAGAA GACAG                 CUCGUACGCUUUU UUGUU      miRNA  3' C             A     U  5'
Ortholog Group
Ortholog Groups: OG5_128738	Accession Taxon NP_001030868 Arabidopsis thaliana NP_001030869 Arabidopsis thaliana NP_001030870 Arabidopsis thaliana NP_171683 Arabidopsis thaliana NP_181519 ( AT2G39900 ) Arabidopsis thaliana NP_191136 Arabidopsis thaliana NP_680133 Arabidopsis thaliana ACO65302 Micromonas sp. RCC299 NP_001047550 Oryza sativa Japonica Group NP_001049655 Oryza sativa Japonica Group NP_001053405 Oryza sativa Japonica Group NP_001064995 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_12.0001000188 Ostreococcus tauri e_gw1.65.246.1 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1360050 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_80000002 Physcomitrella patens subsp. patens 29610.m000403 Ricinus communis 29812.m000202 Ricinus communis 30174.m008997 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF57716 3.7E-9 3 35 No hit NA ProSiteProfiles PS50023 13.8 8 68 IPR001781 Zinc finger, LIM-type SMART SM00132 1.7E-14 9 61 IPR001781 Zinc finger, LIM-type PANTHER PTHR24206 3.2E-21 10 67 No hit NA Pfam PF00412 5.0E-14 10 65 IPR001781 Zinc finger, LIM-type ProSitePatterns PS00478 NA 10 44 IPR001781 Zinc finger, LIM-type SUPERFAMILY SSF57716 1.2E-14 36 76 No hit NA SUPERFAMILY SSF57716 3.6E-9 101 134 No hit NA ProSiteProfiles PS50023 12.3 107 167 IPR001781 Zinc finger, LIM-type SMART SM00132 1.6E-12 108 160 IPR001781 Zinc finger, LIM-type Pfam PF00412 3.8E-13 109 165 IPR001781 Zinc finger, LIM-type SUPERFAMILY SSF57716 1.6E-14 135 174 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787